Literature DB >> 10529213

Buried, charged, non-ion-paired aspartic acid 76 contributes favorably to the conformational stability of ribonuclease T1.

A Giletto1, C N Pace.   

Abstract

The side-chain carboxyl of Asp 76 in ribonuclease T1 (RNase T1) is buried, charged, non-ion-paired, and forms three good intramolecular hydrogen bonds (2.63, 2.69, and 2.89 A) and a 2.66 A hydrogen bond to a buried, conserved water molecule. When Asp 76 was replaced by Asn, Ser, and Ala, the conformational stability of the protein decreased by 3.1, 3.2, and 3.7 kcal/mol, respectively. The stability was measured as a function of pH for wild-type RNase T1 and the D76N mutant and showed that the pH dependence below pH 3 was almost entirely due to Asp 76. The pK of Asp 76 is 0.5 in the native state and 3.7 in the denatured state. Thus, the hydrogen bonding of the carboxyl group of Asp 76 contributes more than half of the net stability of RNase T1 at pH 7. In addition, the charged carboxyl of Asp 76 stabilizes structure in the denatured states of RNase T1 that is not present in D76N, D76S, and D76A.

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Year:  1999        PMID: 10529213     DOI: 10.1021/bi991422s

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  24 in total

1.  The effect of net charge on the solubility, activity, and stability of ribonuclease Sa.

Authors:  K L Shaw; G R Grimsley; G I Yakovlev; A A Makarov; C N Pace
Journal:  Protein Sci       Date:  2001-06       Impact factor: 6.725

2.  Electrostatic contributions to T4 lysozyme stability: solvent-exposed charges versus semi-buried salt bridges.

Authors:  Feng Dong; Huan-Xiang Zhou
Journal:  Biophys J       Date:  2002-09       Impact factor: 4.033

3.  Predicting the energetics of osmolyte-induced protein folding/unfolding.

Authors:  Matthew Auton; D Wayne Bolen
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-07       Impact factor: 11.205

4.  pK values of the ionizable groups of proteins.

Authors:  Richard L Thurlkill; Gerald R Grimsley; J Martin Scholtz; C Nick Pace
Journal:  Protein Sci       Date:  2006-04-05       Impact factor: 6.725

5.  Protein phase diagrams II: nonideal behavior of biochemical reactions in the presence of osmolytes.

Authors:  Allan Chris M Ferreon; Josephine C Ferreon; D Wayne Bolen; Jörg Rösgen
Journal:  Biophys J       Date:  2006-10-06       Impact factor: 4.033

6.  Carboxyl pK(a) values, ion pairs, hydrogen bonding, and the pH-dependence of folding the hyperthermophile proteins Sac7d and Sso7d.

Authors:  Andrew T Clark; Kelley Smith; Ranjith Muhandiram; Stephen P Edmondson; John W Shriver
Journal:  J Mol Biol       Date:  2007-07-10       Impact factor: 5.469

7.  A summary of the measured pK values of the ionizable groups in folded proteins.

Authors:  Gerald R Grimsley; J Martin Scholtz; C Nick Pace
Journal:  Protein Sci       Date:  2009-01       Impact factor: 6.725

8.  High tolerance for ionizable residues in the hydrophobic interior of proteins.

Authors:  Daniel G Isom; Brian R Cannon; Carlos A Castañeda; Aaron Robinson; Bertrand García-Moreno
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-12       Impact factor: 11.205

9.  Thermodynamic and kinetic stability of a large multi-domain enzyme from the hyperthermophile Aeropyrum pernix.

Authors:  Mikael Karlström; Roberta Chiaraluce; Laura Giangiacomo; Ida Helene Steen; Nils-Kåre Birkeland; Rudolf Ladenstein; Valerio Consalvi
Journal:  Extremophiles       Date:  2010-03       Impact factor: 2.395

Review 10.  Forces stabilizing proteins.

Authors:  C Nick Pace; J Martin Scholtz; Gerald R Grimsley
Journal:  FEBS Lett       Date:  2014-05-17       Impact factor: 4.124

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