Literature DB >> 22442237

Crystallization and preliminary X-ray crystallographic analysis of the catalytic domain of human dihydrouridine synthase.

Sam Griffiths1, Robert T Byrne, Alfred A Antson, Fiona Whelan.   

Abstract

Dihydrouridine synthases catalyse the reduction of uridine to dihydrouridine in the D-loop and variable loop of tRNA. The human dihydrouridine synthase HsDus2L has been implicated in the development of pulmonary carcinogenesis. Here, the purification, crystallization and preliminary X-ray characterization of the HsDus2L catalytic domain are reported. The crystals belonged to space group P2(1) and contained a single molecule of HsDus2L in the asymmetric unit. A complete data set was collected to 1.9 Å resolution using synchrotron radiation.
© 2012 International Union of Crystallography

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Year:  2012        PMID: 22442237      PMCID: PMC3310545          DOI: 10.1107/S1744309112003831

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  22 in total

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Authors:  Janet Newman
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-02-25

2.  Towards rationalization of crystallization screening for small- to medium-sized academic laboratories: the PACT/JCSG+ strategy.

Authors:  Janet Newman; David Egan; Thomas S Walter; Ran Meged; Ian Berry; Marouane Ben Jelloul; Joel L Sussman; David I Stuart; Anastassis Perrakis
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-09-28

3.  A novel human tRNA-dihydrouridine synthase involved in pulmonary carcinogenesis.

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Journal:  Cancer Res       Date:  2005-07-01       Impact factor: 12.701

4.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

5.  Posttranscriptional modification of tRNA in psychrophilic bacteria.

Authors:  J J Dalluge; T Hamamoto; K Horikoshi; R Y Morita; K O Stetter; J A McCloskey
Journal:  J Bacteriol       Date:  1997-03       Impact factor: 3.490

6.  The specificities of four yeast dihydrouridine synthases for cytoplasmic tRNAs.

Authors:  Feng Xing; Shawna L Hiley; Timothy R Hughes; Eric M Phizicky
Journal:  J Biol Chem       Date:  2004-02-16       Impact factor: 5.157

7.  Mechanism of dihydrouridine synthase 2 from yeast and the importance of modifications for efficient tRNA reduction.

Authors:  Lance W Rider; Mette B Ottosen; Samuel G Gattis; Bruce A Palfey
Journal:  J Biol Chem       Date:  2009-01-12       Impact factor: 5.157

Review 8.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

9.  BALBES: a molecular-replacement pipeline.

Authors:  Fei Long; Alexei A Vagin; Paul Young; Garib N Murshudov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-12-05

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  3 in total

Review 1.  The Dihydrouridine landscape from tRNA to mRNA: a perspective on synthesis, structural impact and function.

Authors:  Olivier Finet; Carlo Yague-Sanz; Florian Marchand; Damien Hermand
Journal:  RNA Biol       Date:  2022-01       Impact factor: 4.766

2.  From bacterial to human dihydrouridine synthase: automated structure determination.

Authors:  Fiona Whelan; Huw T Jenkins; Samuel C Griffiths; Robert T Byrne; Eleanor J Dodson; Alfred A Antson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-06-30

3.  An extended dsRBD is required for post-transcriptional modification in human tRNAs.

Authors:  Charles Bou-Nader; Ludovic Pecqueur; Damien Bregeon; Amina Kamah; Vincent Guérineau; Béatrice Golinelli-Pimpaneau; Beatriz G Guimarães; Marc Fontecave; Djemel Hamdane
Journal:  Nucleic Acids Res       Date:  2015-10-01       Impact factor: 16.971

  3 in total

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