Literature DB >> 16204814

Inhibition of protein crystallization by evolutionary negative design.

Jonathan P K Doye1, Ard A Louis, Michele Vendruscolo.   

Abstract

Why are proteins so hard to crystallize? We propose an 'evolutionary negative design' principle to explain this difficulty. Proteins have evolved to avoid crystallization because crystallization compromises the viability of the cell. Evolutionary negative design is supported by much evidence in the literature, including the effect of mutations on the crystallizability of a protein, the correlations found in the properties of crystal contacts in bioinformatics databases, and the positive use of protein crystallization by bacteria and viruses.

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Year:  2004        PMID: 16204814     DOI: 10.1088/1478-3967/1/1/P02

Source DB:  PubMed          Journal:  Phys Biol        ISSN: 1478-3967            Impact factor:   2.583


  22 in total

1.  Folding without charges.

Authors:  Martin Kurnik; Linda Hedberg; Jens Danielsson; Mikael Oliveberg
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-27       Impact factor: 11.205

2.  Application of protein engineering to enhance crystallizability and improve crystal properties.

Authors:  Zygmunt S Derewenda
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-04-21

3.  Physicochemical principles that regulate the competition between functional and dysfunctional association of proteins.

Authors:  Sebastian Pechmann; Emmanuel D Levy; Gian Gaetano Tartaglia; Michele Vendruscolo
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-05       Impact factor: 11.205

4.  Introduction of a leucine half-zipper engenders multiple high-quality crystals of a recalcitrant tRNA synthetase.

Authors:  Min Guo; Ryan Shapiro; Paul Schimmel; Xiang-Lei Yang
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-02-12

5.  Participation of protein sequence termini in crystal contacts.

Authors:  Oliviero Carugo
Journal:  Protein Sci       Date:  2011-11-09       Impact factor: 6.725

6.  Proteins evolve on the edge of supramolecular self-assembly.

Authors:  Hector Garcia-Seisdedos; Charly Empereur-Mot; Nadav Elad; Emmanuel D Levy
Journal:  Nature       Date:  2017-08-02       Impact factor: 49.962

7.  Characterizing protein crystal contacts and their role in crystallization: rubredoxin as a case study.

Authors:  Diana Fusco; Jeffrey J Headd; Alfonso De Simone; Jun Wang; Patrick Charbonneau
Journal:  Soft Matter       Date:  2014-01-14       Impact factor: 3.679

8.  Purification and crystallization of dengue and West Nile virus NS2B-NS3 complexes.

Authors:  Allan D'Arcy; Maxime Chaillet; Nikolaus Schiering; Frederic Villard; Siew Pheng Lim; Peggy Lefeuvre; Paul Erbel
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-01-27

9.  The role of negative selection in protein evolution revealed through the energetics of the native state ensemble.

Authors:  Jordan Hoffmann; James O Wrabl; Vincent J Hilser
Journal:  Proteins       Date:  2016-02-13

10.  High-resolution structures of formate dehydrogenase from Candida boidinii.

Authors:  Katja Schirwitz; Andrea Schmidt; Victor S Lamzin
Journal:  Protein Sci       Date:  2007-06       Impact factor: 6.725

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