Literature DB >> 21739502

Participation of protein sequence termini in crystal contacts.

Oliviero Carugo1.   

Abstract

The analysis of the crystal packing interactions, in a nonredundant set of high resolution and monomeric globular protein crystal structures, shows that the residues located at the N- and C-termini of the sequence tend to participate in packing interaction more often than expected and that often they interact with each other. Since the sequence termini are, in general, conformationally very flexible and since they host electrical charges of opposite sign, it can be hypothesized that they play a crucial role in the early formation of the nonphysiological contacts that bring to protein crystallization. It is thus not surprising that modest lengthening/shortening of the sequence termini have often a dramatic effect on protein crystallogenesis.
Copyright © 2011 The Protein Society.

Mesh:

Substances:

Year:  2011        PMID: 21739502      PMCID: PMC3302655          DOI: 10.1002/pro.690

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  14 in total

1.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Screening for soluble expression of recombinant proteins in a 96-well format.

Authors:  R K Knaust; P Nordlund
Journal:  Anal Biochem       Date:  2001-10-01       Impact factor: 3.365

Review 3.  Co-translational folding.

Authors:  B Hardesty; T Tsalkova; G Kramer
Journal:  Curr Opin Struct Biol       Date:  1999-02       Impact factor: 6.809

4.  First insight into the prediction of protein folding rate change upon point mutation.

Authors:  Liang-Tsung Huang; M Michael Gromiha
Journal:  Bioinformatics       Date:  2010-07-08       Impact factor: 6.937

5.  Thermofluor-based high-throughput stability optimization of proteins for structural studies.

Authors:  Ulrika B Ericsson; B Martin Hallberg; George T Detitta; Niek Dekker; Pär Nordlund
Journal:  Anal Biochem       Date:  2006-08-10       Impact factor: 3.365

Review 6.  Predicting experimental properties of proteins from sequence by machine learning techniques.

Authors:  Pawel Smialowski; Antonio J Martin-Galiano; Jürgen Cox; Dmitrij Frishman
Journal:  Curr Protein Pept Sci       Date:  2007-04       Impact factor: 3.272

7.  On the interrelationship between atomic displacement parameters (ADPs) and coordinates in protein structures.

Authors:  Manfred S Weiss
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-11-16

8.  The use of systematic N- and C-terminal deletions to promote production and structural studies of recombinant proteins.

Authors:  Susanne Gräslund; Johanna Sagemark; Helena Berglund; Lars-Göran Dahlgren; Alex Flores; Martin Hammarström; Ida Johansson; Tetyana Kotenyova; Martina Nilsson; Pär Nordlund; Johan Weigelt
Journal:  Protein Expr Purif       Date:  2007-11-22       Impact factor: 1.650

9.  The Protein Data Bank: a computer-based archival file for macromolecular structures.

Authors:  F C Bernstein; T F Koetzle; G J Williams; E F Meyer; M D Brice; J R Rodgers; O Kennard; T Shimanouchi; M Tasumi
Journal:  J Mol Biol       Date:  1977-05-25       Impact factor: 5.469

10.  The Universal Protein Resource (UniProt).

Authors: 
Journal:  Nucleic Acids Res       Date:  2006-11-16       Impact factor: 16.971

View more
  6 in total

1.  Missing strings of residues in protein crystal structures.

Authors:  Kristina Djinovic-Carugo; Oliviero Carugo
Journal:  Intrinsically Disord Proteins       Date:  2015-10-23

2.  Conformational Control of UDP-Galactopyranose Mutase Inhibition.

Authors:  Kittikhun Wangkanont; Valerie J Winton; Katrina T Forest; Laura L Kiessling
Journal:  Biochemistry       Date:  2017-07-20       Impact factor: 3.162

Review 3.  The "Sticky Patch" Model of Crystallization and Modification of Proteins for Enhanced Crystallizability.

Authors:  Zygmunt S Derewenda; Adam Godzik
Journal:  Methods Mol Biol       Date:  2017

4.  DOMMINO: a database of macromolecular interactions.

Authors:  Xingyan Kuang; Jing Ginger Han; Nan Zhao; Bin Pang; Chi-Ren Shyu; Dmitry Korkin
Journal:  Nucleic Acids Res       Date:  2011-12-01       Impact factor: 16.971

5.  Frequency of dipeptides and antidipeptides.

Authors:  Oliviero Carugo
Journal:  Comput Struct Biotechnol J       Date:  2013-08-14       Impact factor: 7.271

6.  DOMMINO 2.0: integrating structurally resolved protein-, RNA-, and DNA-mediated macromolecular interactions.

Authors:  Xingyan Kuang; Andi Dhroso; Jing Ginger Han; Chi-Ren Shyu; Dmitry Korkin
Journal:  Database (Oxford)       Date:  2016-01-30       Impact factor: 3.451

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.