Literature DB >> 16506022

The contradictory definitions of heterochromatin: transcription and silencing.

Kathryn L Huisinga1, Brent Brower-Toland, Sarah C R Elgin.   

Abstract

Eukaryotic genomes are packaged in two general varieties of chromatin: gene-rich euchromatin and gene-poor heterochromatin. Each type of chromatin has been defined by the presence of distinct chromosomal proteins and posttranslational histone modifications. This review addresses recent findings that appear to blur the definitions of euchromatin and heterochromatin by pointing to the presence of typically heterochromatic modifications (including H3K9me) in euchromatin and typically euchromatic enzymes (including RNA polymerases) in heterochromatin. We discuss the implications of these new findings for the current definition of heterochromatin.

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Year:  2006        PMID: 16506022     DOI: 10.1007/s00412-006-0052-x

Source DB:  PubMed          Journal:  Chromosoma        ISSN: 0009-5915            Impact factor:   4.316


  125 in total

1.  Partitioning and plasticity of repressive histone methylation states in mammalian chromatin.

Authors:  Antoine H F M Peters; Stefan Kubicek; Karl Mechtler; Roderick J O'Sullivan; Alwin A H A Derijck; Laura Perez-Burgos; Alexander Kohlmaier; Susanne Opravil; Makoto Tachibana; Yoichi Shinkai; Joost H A Martens; Thomas Jenuwein
Journal:  Mol Cell       Date:  2003-12       Impact factor: 17.970

2.  The small RNA profile during Drosophila melanogaster development.

Authors:  Alexei A Aravin; Mariana Lagos-Quintana; Abdullah Yalcin; Mihaela Zavolan; Debora Marks; Ben Snyder; Terry Gaasterland; Jutta Meyer; Thomas Tuschl
Journal:  Dev Cell       Date:  2003-08       Impact factor: 12.270

3.  Retraction: RNA-interference-directed chromatin modification coupled to RNA polymerase II transcription.

Authors:  Vera Schramke; Daniel M Sheedy; Ahmet M Denli; Carolina Bonila; Karl Ekwall; Gregory J Hannon; Robin C Allshire
Journal:  Nature       Date:  2005-10-13       Impact factor: 49.962

4.  Ubiquitin ligase component Cul4 associates with Clr4 histone methyltransferase to assemble heterochromatin.

Authors:  Songtao Jia; Ryuji Kobayashi; Shiv I S Grewal
Journal:  Nat Cell Biol       Date:  2005-08-28       Impact factor: 28.824

5.  Atypical RNA polymerase subunits required for RNA-directed DNA methylation.

Authors:  Tatsuo Kanno; Bruno Huettel; M Florian Mette; Werner Aufsatz; Estelle Jaligot; Lucia Daxinger; David P Kreil; Marjori Matzke; Antonius J M Matzke
Journal:  Nat Genet       Date:  2005-05-29       Impact factor: 38.330

Review 6.  Dosage-dependent modification of position-effect variegation in Drosophila.

Authors:  S Henikoff
Journal:  Bioessays       Date:  1996-05       Impact factor: 4.345

7.  Expression and functional analysis of three isoforms of human heterochromatin-associated protein HP1 in Drosophila.

Authors:  J Ma; K K Hwang; H J Worman; J C Courvalin; J C Eissenberg
Journal:  Chromosoma       Date:  2001-02       Impact factor: 4.316

8.  Genome-wide HP1 binding in Drosophila: developmental plasticity and genomic targeting signals.

Authors:  Elzo de Wit; Frauke Greil; Bas van Steensel
Journal:  Genome Res       Date:  2005-08-18       Impact factor: 9.043

9.  A chromodomain protein, Chp1, is required for the establishment of heterochromatin in fission yeast.

Authors:  Mahito Sadaie; Tetsushi Iida; Takeshi Urano; Jun-Ichi Nakayama
Journal:  EMBO J       Date:  2004-09-16       Impact factor: 11.598

10.  Heterochromatin protein 1 (HP1) is associated with induced gene expression in Drosophila euchromatin.

Authors:  Lucia Piacentini; Laura Fanti; Maria Berloco; Barbara Perrini; Sergio Pimpinelli
Journal:  J Cell Biol       Date:  2003-05-19       Impact factor: 10.539

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  81 in total

1.  Characterization of a highly conserved histone related protein, Ydl156w, and its functional associations using quantitative proteomic analyses.

Authors:  Joshua M Gilmore; Mihaela E Sardiu; Swaminathan Venkatesh; Brent Stutzman; Allison Peak; Chris W Seidel; Jerry L Workman; Laurence Florens; Michael P Washburn
Journal:  Mol Cell Proteomics       Date:  2011-12-22       Impact factor: 5.911

2.  Fine-tuning of CD8(+) T-cell effector functions by targeting the 2B4-CD48 interaction.

Authors:  Anna Lissina; David R Ambrozak; Kristin L Boswell; Wenjing Yang; Eli Boritz; Yoshiyuki Wakabayashi; Maria C Iglesias; Masao Hashimoto; Masafumi Takiguchi; Elias Haddad; Daniel C Douek; Jun Zhu; Richard A Koup; Takuya Yamamoto; Victor Appay
Journal:  Immunol Cell Biol       Date:  2016-02-10       Impact factor: 5.126

Review 3.  Transcription and RNA interference in the formation of heterochromatin.

Authors:  Shiv I S Grewal; Sarah C R Elgin
Journal:  Nature       Date:  2007-05-24       Impact factor: 49.962

Review 4.  Constitutive heterochromatin: a surprising variety of expressed sequences.

Authors:  Patrizio Dimitri; Ruggiero Caizzi; Ennio Giordano; Maria Carmela Accardo; Giovanna Lattanzi; Giuseppe Biamonti
Journal:  Chromosoma       Date:  2009-05-02       Impact factor: 4.316

5.  Chromodomain-mediated spreading on active genes.

Authors:  Alison M Hosey; Marjorie Brand
Journal:  Nat Struct Mol Biol       Date:  2009-01       Impact factor: 15.369

6.  Transcription and activation under environmental stress of the complex telomeric repeats of Chironomus thummi.

Authors:  J L Martínez-Guitarte; J L Díez; G Morcillo
Journal:  Chromosome Res       Date:  2008-10-29       Impact factor: 5.239

7.  Evolution of a distinct genomic domain in Drosophila: comparative analysis of the dot chromosome in Drosophila melanogaster and Drosophila virilis.

Authors:  Wilson Leung; Christopher D Shaffer; Taylor Cordonnier; Jeannette Wong; Michelle S Itano; Elizabeth E Slawson Tempel; Elmer Kellmann; David Michael Desruisseau; Carolyn Cain; Robert Carrasquillo; Tien M Chusak; Katazyna Falkowska; Kelli D Grim; Rui Guan; Jacquelyn Honeybourne; Sana Khan; Louis Lo; Rebecca McGaha; Jevon Plunkett; Justin M Richner; Ryan Richt; Leah Sabin; Anita Shah; Anushree Sharma; Sonal Singhal; Fine Song; Christopher Swope; Craig B Wilen; Jeremy Buhler; Elaine R Mardis; Sarah C R Elgin
Journal:  Genetics       Date:  2010-05-17       Impact factor: 4.562

8.  DNA polymerase epsilon, acetylases and remodellers cooperate to form a specialized chromatin structure at a tRNA insulator.

Authors:  Namrita Dhillon; Jesse Raab; Julie Guzzo; Shawn J Szyjka; Sunil Gangadharan; Oscar M Aparicio; Brenda Andrews; Rohinton T Kamakaka
Journal:  EMBO J       Date:  2009-07-23       Impact factor: 11.598

9.  Chromatin condensation in terminally differentiating mouse erythroblasts does not involve special architectural proteins but depends on histone deacetylation.

Authors:  Evgenya Y Popova; Sharon Wald Krauss; Sarah A Short; Gloria Lee; Jonathan Villalobos; Joan Etzell; Mark J Koury; Paul A Ney; Joel Anne Chasis; Sergei A Grigoryev
Journal:  Chromosome Res       Date:  2009-01-27       Impact factor: 5.239

10.  Multiple SET methyltransferases are required to maintain normal heterochromatin domains in the genome of Drosophila melanogaster.

Authors:  Brent Brower-Toland; Nicole C Riddle; Hongmei Jiang; Kathryn L Huisinga; Sarah C R Elgin
Journal:  Genetics       Date:  2009-02-02       Impact factor: 4.562

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