Literature DB >> 16159777

Positive autoregulation of cI is a dispensable feature of the phage lambda gene regulatory circuitry.

Christine B Michalowski1, John W Little.   

Abstract

Complex gene regulatory circuits contain many features that are likely to contribute to their operation. It is unclear, however, whether all these features are necessary for proper circuit behavior or whether certain ones are refinements that make the circuit work better but are dispensable for qualitatively normal behavior. We have addressed this question using the phage lambda regulatory circuit, which can persist in two stable states, the lytic state and the lysogenic state. In the lysogenic state, the CI repressor positively regulates its own expression by stimulating transcription from the P(RM) promoter. We tested whether this feature is an essential part of the regulatory circuitry. Several phages with a cI mutation preventing positive autoregulation and an up mutation in the P(RM) promoter showed near-normal behavior. We conclude that positive autoregulation is not necessary for proper operation of the lambda circuitry and speculate that it serves a partially redundant function of stabilizing a bistable circuit, a form of redundancy we term "circuit-level redundancy." We discuss our findings in the context of a two-stage model for evolution and elaboration of regulatory circuits from simpler to more complex forms.

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Year:  2005        PMID: 16159777      PMCID: PMC1236637          DOI: 10.1128/JB.187.18.6430-6442.2005

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  38 in total

1.  Sequence tolerance of the phage lambda PRM promoter: implications for evolution of gene regulatory circuitry.

Authors:  Christine B Michalowski; Megan D Short; John W Little
Journal:  J Bacteriol       Date:  2004-12       Impact factor: 3.490

2.  A single glutamic acid residue plays a key role in the transcriptional activation function of lambda repressor.

Authors:  F D Bushman; C Shang; M Ptashne
Journal:  Cell       Date:  1989-09-22       Impact factor: 41.582

3.  A cII-dependent promoter is located within the Q gene of bacteriophage lambda.

Authors:  B C Hoopes; W R McClure
Journal:  Proc Natl Acad Sci U S A       Date:  1985-05       Impact factor: 11.205

4.  The OR control system of bacteriophage lambda. A physical-chemical model for gene regulation.

Authors:  M A Shea; G K Ackers
Journal:  J Mol Biol       Date:  1985-01-20       Impact factor: 5.469

5.  Characterization of a doubly mutant derivative of the lambda PRM promoter. Effects of mutations on activation of PRM.

Authors:  J J Hwang; S Brown; G N Gussin
Journal:  J Mol Biol       Date:  1988-04-20       Impact factor: 5.469

Review 6.  LexA cleavage and other self-processing reactions.

Authors:  J W Little
Journal:  J Bacteriol       Date:  1993-08       Impact factor: 3.490

7.  Target of the transcriptional activation function of phage lambda cI protein.

Authors:  M Li; H Moyle; M M Susskind
Journal:  Science       Date:  1994-01-07       Impact factor: 47.728

8.  Repressor structure and the mechanism of positive control.

Authors:  A Hochschild; N Irwin; M Ptashne
Journal:  Cell       Date:  1983-02       Impact factor: 41.582

9.  The SOS regulatory system: control of its state by the level of RecA protease.

Authors:  J W Little
Journal:  J Mol Biol       Date:  1983-07-15       Impact factor: 5.469

10.  Autodigestion of lexA and phage lambda repressors.

Authors:  J W Little
Journal:  Proc Natl Acad Sci U S A       Date:  1984-03       Impact factor: 11.205

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  18 in total

1.  The Need for Speed: Run-On Oligomer Filament Formation Provides Maximum Speed with Maximum Sequestration of Activity.

Authors:  Claudia J Barahona; L Emilia Basantes; Kassidy J Tompkins; Desirae M Heitman; Barbara I Chukwu; Juan Sanchez; Jonathan L Sanchez; Niloofar Ghadirian; Chad K Park; N C Horton
Journal:  J Virol       Date:  2019-02-19       Impact factor: 5.103

2.  Stability and instability in the lysogenic state of phage lambda.

Authors:  John W Little; Christine B Michalowski
Journal:  J Bacteriol       Date:  2010-09-24       Impact factor: 3.490

3.  A synthetic phage lambda regulatory circuit.

Authors:  Shota Atsumi; John W Little
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-29       Impact factor: 11.205

4.  Identification and characterization of the immunity repressor (ImmR) that controls the mobile genetic element ICEBs1 of Bacillus subtilis.

Authors:  Jennifer M Auchtung; Catherine A Lee; Katherine L Garrison; Alan D Grossman
Journal:  Mol Microbiol       Date:  2007-05-18       Impact factor: 3.501

5.  Cooperative DNA binding by CI repressor is dispensable in a phage lambda variant.

Authors:  Andrea C Babić; John W Little
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-25       Impact factor: 11.205

6.  Role of the lytic repressor in prophage induction of phage lambda as analyzed by a module-replacement approach.

Authors:  Shota Atsumi; John W Little
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-14       Impact factor: 11.205

7.  Binding cooperativity in phage lambda is not sufficient to produce an effective switch.

Authors:  Tomás Gedeon; Konstantin Mischaikow; Kathryn Patterson; Eliane Traldi
Journal:  Biophys J       Date:  2008-05-01       Impact factor: 4.033

8.  Role of cis-acting sites in stimulation of the phage λ P(RM) promoter by CI-mediated looping.

Authors:  Christine B Michalowski; John W Little
Journal:  J Bacteriol       Date:  2013-05-24       Impact factor: 3.490

Review 9.  Decision making in living cells: lessons from a simple system.

Authors:  Ido Golding
Journal:  Annu Rev Biophys       Date:  2011       Impact factor: 12.981

Review 10.  The bacteriophage lambda CI protein finds an asymmetric solution.

Authors:  Ann Hochschild; Mitchell Lewis
Journal:  Curr Opin Struct Biol       Date:  2009-01-30       Impact factor: 6.809

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