Literature DB >> 16151150

Genome-wide transcriptional variation within and between steady states for continuous growth of the hyperthermophile Thermotoga Maritima.

Keith R Shockley1, Kevin L Scott, Marybeth A Pysz, Shannon B Conners, Matthew R Johnson, Clemente I Montero, Russell D Wolfinger, Robert M Kelly.   

Abstract

Maltose-limited, continuous growth of the hyperthermophile Thermotoga maritima at different temperatures and dilution rates (80 degrees C/0.25 h(-1), 80 degrees C/0.17 h(-1), and 85 degrees C/0.25 h(-1)) showed that transcriptome-wide variation in gene expression within mechanical steady states was minimal compared to that between steady states, supporting the efficacy of chemostat-based approaches for functional genomics studies.

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Year:  2005        PMID： 16151150      PMCID： PMC1214699          DOI： 10.1128/AEM.71.9.5572-5576.2005

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  10 in total

1.  Continuous cultivation of hyperthermophiles.

Authors:  M A Pysz; K D Rinker; K R Shockley; R M Kelly
Journal:  Methods Enzymol       Date:  2001       Impact factor: 1.600

2.  Heat shock response by the hyperthermophilic archaeon Pyrococcus furiosus.

Authors:  Keith R Shockley; Donald E Ward; Swapnil R Chhabra; Shannon B Conners; Clemente I Montero; Robert M Kelly
Journal:  Appl Environ Microbiol       Date:  2003-04       Impact factor: 4.792

Review 3.  Design issues for cDNA microarray experiments.

Authors:  Yee Hwa Yang; Terry Speed
Journal:  Nat Rev Genet       Date:  2002-08       Impact factor: 53.242

4.  Carbohydrate-induced differential gene expression patterns in the hyperthermophilic bacterium Thermotoga maritima.

Authors:  Swapnil R Chhabra; Keith R Shockley; Shannon B Conners; Kevin L Scott; Russell D Wolfinger; Robert M Kelly
Journal:  J Biol Chem       Date:  2002-12-09       Impact factor: 5.157

5.  Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima.

Authors:  K E Nelson; R A Clayton; S R Gill; M L Gwinn; R J Dodson; D H Haft; E K Hickey; J D Peterson; W C Nelson; K A Ketchum; L McDonald; T R Utterback; J A Malek; K D Linher; M M Garrett; A M Stewart; M D Cotton; M S Pratt; C A Phillips; D Richardson; J Heidelberg; G G Sutton; R D Fleischmann; J A Eisen; O White; S L Salzberg; H O Smith; J C Venter; C M Fraser
Journal:  Nature       Date:  1999-05-27       Impact factor: 49.962

6.  Population density-dependent regulation of exopolysaccharide formation in the hyperthermophilic bacterium Thermotoga maritima.

Authors:  Matthew R Johnson; Clemente I Montero; Shannon B Conners; Keith R Shockley; Stephanie L Bridger; Robert M Kelly
Journal:  Mol Microbiol       Date:  2005-02       Impact factor: 3.501

7.  Effect of carbon and nitrogen sources on growth dynamics and exopolysaccharide production for the hyperthermophilic archaeon Thermococcus litoralis and bacterium Thermotoga maritima.

Authors:  K D Rinker; R M Kelly
Journal:  Biotechnol Bioeng       Date:  2000-09-05       Impact factor: 4.530

8.  The COG database: new developments in phylogenetic classification of proteins from complete genomes.

Authors:  R L Tatusov; D A Natale; I V Garkavtsev; T A Tatusova; U T Shankavaram; B S Rao; B Kiryutin; M Y Galperin; N D Fedorova; E V Koonin
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

9.  Reproducibility of oligonucleotide microarray transcriptome analyses. An interlaboratory comparison using chemostat cultures of Saccharomyces cerevisiae.

Authors:  Matthew D W Piper; Pascale Daran-Lapujade; Christoffer Bro; Birgitte Regenberg; Steen Knudsen; Jens Nielsen; Jack T Pronk
Journal:  J Biol Chem       Date:  2002-07-16       Impact factor: 5.157

10.  Transcriptional analysis of dynamic heat-shock response by the hyperthermophilic bacterium Thermotoga maritima.

Authors:  Marybeth A Pysz; Donald E Ward; Keith R Shockley; Clemente I Montero; Shannon B Conners; Matthew R Johnson; Robert M Kelly
Journal:  Extremophiles       Date:  2004-02-27       Impact factor: 2.395
  10 in total
  6 in total

1.  The renaissance of continuous culture in the post-genomics age.

Authors:  Alan T Bull
Journal:  J Ind Microbiol Biotechnol       Date:  2010-09-11       Impact factor: 3.346

2.  Responses of wild-type and resistant strains of the hyperthermophilic bacterium Thermotoga maritima to chloramphenicol challenge.

Authors:  Clemente I Montero; Matthew R Johnson; Chung-Jung Chou; Shannon B Conners; Sarah G Geouge; Sabrina Tachdjian; Jason D Nichols; Robert M Kelly
Journal:  Appl Environ Microbiol       Date:  2007-06-08       Impact factor: 4.792

3.  Hyperthermophilic Thermotoga species differ with respect to specific carbohydrate transporters and glycoside hydrolases.

Authors:  Andrew D Frock; Steven R Gray; Robert M Kelly
Journal:  Appl Environ Microbiol       Date:  2012-01-13       Impact factor: 4.792

4.  Colocation of genes encoding a tRNA-mRNA hybrid and a putative signaling peptide on complementary strands in the genome of the hyperthermophilic bacterium Thermotoga maritima.

Authors:  Clemente I Montero; Derrick L Lewis; Matthew R Johnson; Shannon B Conners; Elizabeth A Nance; Jason D Nichols; Robert M Kelly
Journal:  J Bacteriol       Date:  2006-10       Impact factor: 3.490

5.  Contribution of Pentose Catabolism to Molecular Hydrogen Formation by Targeted Disruption of Arabinose Isomerase (araA) in the Hyperthermophilic Bacterium Thermotoga maritima.

Authors:  Derrick White; Raghuveer Singh; Deepak Rudrappa; Jackie Mateo; Levi Kramer; Laura Freese; Paul Blum
Journal:  Appl Environ Microbiol       Date:  2017-02-01       Impact factor: 4.792

6.  Several archaeal homologs of putative oligopeptide-binding proteins encoded by Thermotoga maritima bind sugars.

Authors:  Dhaval M Nanavati; Kamolwan Thirangoon; Kenneth M Noll
Journal:  Appl Environ Microbiol       Date:  2006-02       Impact factor: 4.792
  6 in total

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