Literature DB >> 16141336

The crystal structure of a cross-linked actin dimer suggests a detailed molecular interface in F-actin.

Dmitry S Kudryashov1, Michael R Sawaya, Helty Adisetiyo, Todd Norcross, György Hegyi, Emil Reisler, Todd O Yeates.   

Abstract

The 2.5-A resolution crystal structure is reported for an actin dimer, composed of two protomers cross-linked along the longitudinal (or vertical) direction of the F-actin filament. The crystal structure provides an atomic resolution view of a molecular interface between actin protomers, which we argue represents a near-native interaction in the F-actin filament. The interaction involves subdomains 3 and 4 from distinct protomers. The atomic positions in the interface visualized differ by 5-10 A from those suggested by previous models of F-actin. Such differences fall within the range of uncertainties allowed by the fiber diffraction and electron microscopy methods on which previous models have been based. In the crystal, the translational arrangement of protomers lacks the slow twist found in native filaments. A plausible model of F-actin can be constructed by reintroducing the known filament twist, without disturbing significantly the interface observed in the actin dimer crystal.

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Year:  2005        PMID: 16141336      PMCID: PMC1196358          DOI: 10.1073/pnas.0506429102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  39 in total

1.  Prokaryotic origin of the actin cytoskeleton.

Authors:  F van den Ent; L A Amos; J Löwe
Journal:  Nature       Date:  2001-09-06       Impact factor: 49.962

2.  How does ATP hydrolysis control actin's associations?

Authors:  Elena P Sablin; John F Dawson; Margaret S VanLoock; James A Spudich; Edward H Egelman; Robert J Fletterick
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-07       Impact factor: 11.205

3.  Structure of an F-actin trimer disrupted by gelsolin and implications for the mechanism of severing.

Authors:  John F Dawson; Elena P Sablin; James A Spudich; Robert J Fletterick
Journal:  J Biol Chem       Date:  2002-09-27       Impact factor: 5.157

4.  F-actin-like filaments formed by plasmid segregation protein ParM.

Authors:  Fusinita van den Ent; Jakob Møller-Jensen; Linda A Amos; Kenn Gerdes; Jan Löwe
Journal:  EMBO J       Date:  2002-12-16       Impact factor: 11.598

5.  Probing the structure of F-actin: cross-links constrain atomic models and modify actin dynamics.

Authors:  A Orlova; V E Galkin; M S VanLoock; E Kim; A Shvetsov; E Reisler; E H Egelman
Journal:  J Mol Biol       Date:  2001-09-07       Impact factor: 5.469

6.  Actin cross-linking and inhibition of the actomyosin motor.

Authors:  Eldar Kim; Elena Bobkova; György Hegyi; Andras Muhlrad; Emil Reisler
Journal:  Biochemistry       Date:  2002-01-08       Impact factor: 3.162

7.  Polylysine induces an antiparallel actin dimer that nucleates filament assembly: crystal structure at 3.5-A resolution.

Authors:  Michael R Bubb; Lakshmanan Govindasamy; Elena G Yarmola; Sergey M Vorobiev; Steven C Almo; Thayumanasamy Somasundaram; Michael S Chapman; Mavis Agbandje-McKenna; Robert McKenna
Journal:  J Biol Chem       Date:  2002-04-03       Impact factor: 5.157

8.  A new internal mode in F-actin helps explain the remarkable evolutionary conservation of actin's sequence and structure.

Authors:  Vitold E Galkin; Margaret S VanLoock; Albina Orlova; Edward H Egelman
Journal:  Curr Biol       Date:  2002-04-02       Impact factor: 10.834

9.  The structure of nonvertebrate actin: implications for the ATP hydrolytic mechanism.

Authors:  S Vorobiev; B Strokopytov; D G Drubin; C Frieden; S Ono; J Condeelis; P A Rubenstein; S C Almo
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-05       Impact factor: 11.205

10.  Crystal structure of monomeric actin in the ATP state. Structural basis of nucleotide-dependent actin dynamics.

Authors:  Philip Graceffa; Roberto Dominguez
Journal:  J Biol Chem       Date:  2003-06-17       Impact factor: 5.157

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  20 in total

1.  Three-dimensional structure of cofilin bound to monomeric actin derived by structural mass spectrometry data.

Authors:  J K Amisha Kamal; Sabrina A Benchaar; Keiji Takamoto; Emil Reisler; Mark R Chance
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-30       Impact factor: 11.205

2.  Mechanical distortion of single actin filaments induced by external force: detection by fluorescence imaging.

Authors:  Togo Shimozawa; Shin'ichi Ishiwata
Journal:  Biophys J       Date:  2009-02       Impact factor: 4.033

3.  Archaeal actin from a hyperthermophile forms a single-stranded filament.

Authors:  Tatjana Braun; Albina Orlova; Karin Valegård; Ann-Christin Lindås; Gunnar F Schröder; Edward H Egelman
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-29       Impact factor: 11.205

4.  Identification of cation-binding sites on actin that drive polymerization and modulate bending stiffness.

Authors:  Hyeran Kang; Michael J Bradley; Brannon R McCullough; Anaëlle Pierre; Elena E Grintsevich; Emil Reisler; Enrique M De La Cruz
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-01       Impact factor: 11.205

5.  O-GlcNAcylation and phosphorylation of β-actin Ser199 in diabetic nephropathy.

Authors:  Yoshihiro Akimoto; Kunimasa Yan; Yuri Miura; Hiroki Tsumoto; Tosifusa Toda; Toshiyuki Fukutomi; Daisuke Sugahara; Akihiko Kudo; Tomio Arai; Yuko Chiba; Shinya Kaname; Gerald W Hart; Tamao Endo; Hayato Kawakami
Journal:  Am J Physiol Renal Physiol       Date:  2019-09-30

6.  WDR11, a WD protein that interacts with transcription factor EMX1, is mutated in idiopathic hypogonadotropic hypogonadism and Kallmann syndrome.

Authors:  Hyung-Goo Kim; Jang-Won Ahn; Ingo Kurth; Reinhard Ullmann; Hyun-Taek Kim; Anita Kulharya; Kyung-Soo Ha; Yasuhide Itokawa; Irene Meliciani; Wolfgang Wenzel; Deresa Lee; Georg Rosenberger; Metin Ozata; David P Bick; Richard J Sherins; Takahiro Nagase; Mustafa Tekin; Soo-Hyun Kim; Cheol-Hee Kim; Hans-Hilger Ropers; James F Gusella; Vera Kalscheuer; Cheol Yong Choi; Lawrence C Layman
Journal:  Am J Hum Genet       Date:  2010-10-08       Impact factor: 11.025

7.  Flavonoids affect actin functions in cytoplasm and nucleus.

Authors:  Markus Böhl; Simon Tietze; Andrea Sokoll; Sineej Madathil; Frank Pfennig; Joannis Apostolakis; Karim Fahmy; Herwig O Gutzeit
Journal:  Biophys J       Date:  2007-06-15       Impact factor: 4.033

8.  X-ray scattering study of actin polymerization nuclei assembled by tandem W domains.

Authors:  Grzegorz Rebowski; Malgorzata Boczkowska; David B Hayes; Liang Guo; Thomas C Irving; Roberto Dominguez
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-31       Impact factor: 11.205

9.  Structural polymorphism in F-actin.

Authors:  Vitold E Galkin; Albina Orlova; Gunnar F Schröder; Edward H Egelman
Journal:  Nat Struct Mol Biol       Date:  2010-10-10       Impact factor: 15.369

10.  Cofilin-induced changes in F-actin detected via cross-linking with benzophenone-4-maleimide.

Authors:  Christine K Chen; Sabrina A Benchaar; Mai Phan; Elena E Grintsevich; Rachel R Ogorzalek Loo; Joseph A Loo; Emil Reisler
Journal:  Biochemistry       Date:  2013-07-31       Impact factor: 3.162

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