Literature DB >> 18669664

X-ray scattering study of actin polymerization nuclei assembled by tandem W domains.

Grzegorz Rebowski1, Malgorzata Boczkowska, David B Hayes, Liang Guo, Thomas C Irving, Roberto Dominguez.   

Abstract

The initiation of actin polymerization in cells requires actin filament nucleators. With the exception of formins, known filament nucleators use the Wiskott-Aldrich syndrome protein (WASP) homology 2 (WH2 or W) domain for interaction with actin. A common architecture, found in Spire, Cobl, VopL, and VopF, consists of tandem W domains that tie together three to four actin monomers to form a polymerization nucleus. Uncontrollable polymerization has prevented the structural investigation of such nuclei. We have engineered stable nuclei consisting of an actin dimer and a trimer stabilized by tandem W domain hybrid constructs and studied their structures in solution by x-ray scattering. We show that Spire-like tandem W domains stabilize a polymerization nucleus by lining up actin subunits along the long-pitch helix of the actin filament. Intersubunit contacts in the polymerization nucleus, thought to involve the DNase I-binding loop of actin, coexist with the binding of the W domain in the cleft between actin subdomains 1 and 3. The successful stabilization of filament-like multiactin assemblies opens the way to the crystallographic investigation of intersubunit contacts in the actin filament.

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Year:  2008        PMID: 18669664      PMCID: PMC2504828          DOI: 10.1073/pnas.0801650105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  25 in total

1.  Thermodynamics and kinetics of actin filament nucleation.

Authors:  D Sept; J A McCammon
Journal:  Biophys J       Date:  2001-08       Impact factor: 4.033

2.  The BioCAT undulator beamline 18ID: a facility for biological non-crystalline diffraction and X-ray absorption spectroscopy at the Advanced Photon Source.

Authors:  R Fischetti; S Stepanov; G Rosenbaum; R Barrea; E Black; D Gore; R Heurich; E Kondrashkina; A J Kropf; S Wang; Ke Zhang; T C Irving; G B Bunker
Journal:  J Synchrotron Radiat       Date:  2004-08-17       Impact factor: 2.616

3.  Analysis of heterologous interacting systems by sedimentation velocity: curve fitting algorithms for estimation of sedimentation coefficients, equilibrium and kinetic constants.

Authors:  Walter F Stafford; Peter J Sherwood
Journal:  Biophys Chem       Date:  2004-03-01       Impact factor: 2.352

4.  Ligation-independent cloning of PCR products (LIC-PCR).

Authors:  C Aslanidis; P J de Jong
Journal:  Nucleic Acids Res       Date:  1990-10-25       Impact factor: 16.971

5.  Actin-binding proteins--a unifying hypothesis.

Authors:  Roberto Dominguez
Journal:  Trends Biochem Sci       Date:  2004-11       Impact factor: 13.807

6.  Atomic model of the actin filament.

Authors:  K C Holmes; D Popp; W Gebhard; W Kabsch
Journal:  Nature       Date:  1990-09-06       Impact factor: 49.962

7.  X-ray scattering study of activated Arp2/3 complex with bound actin-WCA.

Authors:  Malgorzata Boczkowska; Grzegorz Rebowski; Maxim V Petoukhov; David B Hayes; Dmitri I Svergun; Roberto Dominguez
Journal:  Structure       Date:  2008-05       Impact factor: 5.006

8.  Inhibition of actin polymerization by latrunculin A.

Authors:  M Coué; S L Brenner; I Spector; E D Korn
Journal:  FEBS Lett       Date:  1987-03-23       Impact factor: 4.124

9.  Purification of muscle actin.

Authors:  J D Pardee; J A Spudich
Journal:  Methods Enzymol       Date:  1982       Impact factor: 1.600

10.  Structural basis of actin sequestration by thymosin-beta4: implications for WH2 proteins.

Authors:  Edward Irobi; Adeleke H Aguda; Mårten Larsson; Christophe Guerin; Helen L Yin; Leslie D Burtnick; Laurent Blanchoin; Robert C Robinson
Journal:  EMBO J       Date:  2004-08-26       Impact factor: 11.598

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  18 in total

1.  Molecular architecture of the Spire-actin nucleus and its implication for actin filament assembly.

Authors:  Tomasz Sitar; Julia Gallinger; Anna M Ducka; Teemu P Ikonen; Michael Wohlhoefler; Kurt M Schmoller; Andreas R Bausch; Peteranne Joel; Kathleen M Trybus; Angelika A Noegel; Michael Schleicher; Robert Huber; Tad A Holak
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-21       Impact factor: 11.205

2.  Structures of actin-bound Wiskott-Aldrich syndrome protein homology 2 (WH2) domains of Spire and the implication for filament nucleation.

Authors:  Anna M Ducka; Peteranne Joel; Grzegorz M Popowicz; Kathleen M Trybus; Michael Schleicher; Angelika A Noegel; Robert Huber; Tad A Holak; Tomasz Sitar
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-10       Impact factor: 11.205

Review 3.  New mechanisms and functions of actin nucleation.

Authors:  Elif Nur Firat-Karalar; Matthew D Welch
Journal:  Curr Opin Cell Biol       Date:  2010-11-17       Impact factor: 8.382

Review 4.  A nucleator arms race: cellular control of actin assembly.

Authors:  Kenneth G Campellone; Matthew D Welch
Journal:  Nat Rev Mol Cell Biol       Date:  2010-03-18       Impact factor: 94.444

Review 5.  Specification of Architecture and Function of Actin Structures by Actin Nucleation Factors.

Authors:  Colleen T Skau; Clare M Waterman
Journal:  Annu Rev Biophys       Date:  2015       Impact factor: 12.981

6.  Interactions of isolated C-terminal fragments of neural Wiskott-Aldrich syndrome protein (N-WASP) with actin and Arp2/3 complex.

Authors:  Jean-François Gaucher; Chloé Maugé; Dominique Didry; Bérengère Guichard; Louis Renault; Marie-France Carlier
Journal:  J Biol Chem       Date:  2012-07-30       Impact factor: 5.157

7.  Biochemical Activities of the Wiskott-Aldrich Syndrome Homology Region 2 Domains of Sarcomere Length Short (SALS) Protein.

Authors:  Mónika Ágnes Tóth; Andrea Kinga Majoros; Andrea Teréz Vig; Ede Migh; Miklós Nyitrai; József Mihály; Beáta Bugyi
Journal:  J Biol Chem       Date:  2015-11-17       Impact factor: 5.157

Review 8.  Structural insights into de novo actin polymerization.

Authors:  Roberto Dominguez
Journal:  Curr Opin Struct Biol       Date:  2010-01-22       Impact factor: 6.809

Review 9.  The WH2 Domain and Actin Nucleation: Necessary but Insufficient.

Authors:  Roberto Dominguez
Journal:  Trends Biochem Sci       Date:  2016-04-05       Impact factor: 13.807

Review 10.  Actin filament nucleation and elongation factors--structure-function relationships.

Authors:  Roberto Dominguez
Journal:  Crit Rev Biochem Mol Biol       Date:  2009 Nov-Dec       Impact factor: 8.250

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