Literature DB >> 16128591

Moving a phenol hydroxyl group from the surface to the interior of a protein: effects on the phenol potential and pK(A).

Sam Hay1, Kristina Westerlund, Cecilia Tommos.   

Abstract

De novo protein design and electrochemistry were used to measure changes in the potential and pK(A) of a phenol when its OH group is moved from a solvent-exposed to a sequestered protein position. A "phenol rotation strategy" was adopted in which phenols, containing a SH in position 4, 3, or 2 relative to the OH group, were bound to a buried protein site. The alpha(3)C protein used here is a tryptophan to cysteine variant of the structurally defined alpha(3)W protein (Dai et al. (2002) J. Am. Chem. Soc. 124, 10952-10953). The protein characteristics of alpha(3)C and the three mercaptophenol-alpha(3)C (MP-alpha(3)C) proteins are shown to be close to those of alpha(3)W. Moreover, the phenol OH group is fully solvent exposed in 4MP-alpha(3)C and more sequestered in 3MP-alpha(3)C and 2MP-alpha(3)C. Here we compare the redox properties of the three mercaptophenols when bound to alpha(3)C and to cysteine free in water. The pK(A) and E(peak) values are essential identical when 4MP is ligated to alpha(3)C relative to when it is free in solution. In contrast, these values are increased in 3MP-alpha(3)C and 2MP-alpha(3)C relative to the solvated compounds. The E(peak) vs pH plots all display a approximately 59 mV/pH unit dependence. We conclude that interactions with the OH group dominate the phenol redox characteristics. In 3MP-alpha(3)C and 2MP-alpha(3)C, hydrogen bonds between the protein and the bound phenols appear to either stabilize the reduced phenol or destabilize the radical, relative to the aqueous buffer, raising the potential by 0.11 and 0.12 V, respectively.

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Year:  2005        PMID: 16128591     DOI: 10.1021/bi050901q

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  15 in total

1.  Reversible voltammograms and a Pourbaix diagram for a protein tyrosine radical.

Authors:  Bruce W Berry; Melissa C Martínez-Rivera; Cecilia Tommos
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-06       Impact factor: 11.205

Review 2.  H-transfers in Photosystem II: what can we learn from recent lessons in the enzyme community?

Authors:  Sam Hay; Nigel S Scrutton
Journal:  Photosynth Res       Date:  2008-09-03       Impact factor: 3.573

Review 3.  Redox properties of tyrosine and related molecules.

Authors:  Jeffrey J Warren; Jay R Winkler; Harry B Gray
Journal:  FEBS Lett       Date:  2011-12-26       Impact factor: 4.124

4.  Formal Reduction Potentials of Difluorotyrosine and Trifluorotyrosine Protein Residues: Defining the Thermodynamics of Multistep Radical Transfer.

Authors:  Kanchana R Ravichandran; Allan B Zong; Alexander T Taguchi; Daniel G Nocera; JoAnne Stubbe; Cecilia Tommos
Journal:  J Am Chem Soc       Date:  2017-02-21       Impact factor: 15.419

5.  Site-specific incorporation of 3-nitrotyrosine as a probe of pKa perturbation of redox-active tyrosines in ribonucleotide reductase.

Authors:  Kenichi Yokoyama; Ulla Uhlin; Joanne Stubbe
Journal:  J Am Chem Soc       Date:  2010-06-23       Impact factor: 15.419

6.  Iron(IV)hydroxide pK(a) and the role of thiolate ligation in C-H bond activation by cytochrome P450.

Authors:  Timothy H Yosca; Jonathan Rittle; Courtney M Krest; Elizabeth L Onderko; Alexey Silakov; Julio C Calixto; Rachel K Behan; Michael T Green
Journal:  Science       Date:  2013-11-15       Impact factor: 47.728

7.  Reversible phenol oxidation and reduction in the structurally well-defined 2-Mercaptophenol-α₃C protein.

Authors:  Cecilia Tommos; Kathleen G Valentine; Melissa C Martínez-Rivera; Li Liang; Veronica R Moorman
Journal:  Biochemistry       Date:  2013-02-14       Impact factor: 3.162

8.  Uno Ferro, a de novo Designed Protein, Binds Transition Metals with High Affinity and Stabilizes Semiquinone Radical Anion.

Authors:  Jennifer H Yoon; Alona V Kulesha; Zsofia Lengyel-Zhand; Alexander N Volkov; Joel J Rempillo; Areetha D'Souza; Christos Costeas; Cara Chester; Elizabeth R Caselle; Olga V Makhlynets
Journal:  Chemistry       Date:  2019-10-31       Impact factor: 5.236

9.  Pourbaix Diagram, Proton-Coupled Electron Transfer, and Decay Kinetics of a Protein Tryptophan Radical: Comparing the Redox Properties of W32 and Y32 Generated Inside the Structurally Characterized α3W and α3Y Proteins.

Authors:  Starla D Glover; Robin Tyburski; Li Liang; Cecilia Tommos; Leif Hammarström
Journal:  J Am Chem Soc       Date:  2017-12-19       Impact factor: 15.419

10.  Designed metalloprotein stabilizes a semiquinone radical.

Authors:  Gözde Ulas; Thomas Lemmin; Yibing Wu; George T Gassner; William F DeGrado
Journal:  Nat Chem       Date:  2016-02-15       Impact factor: 24.427

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