Literature DB >> 16117545

Sulfur K-edge XAS and DFT calculations on P450 model complexes: effects of hydrogen bonding on electronic structure and redox potentials.

Abhishek Dey1, Taka-aki Okamura, Norikazu Ueyama, Britt Hedman, Keith O Hodgson, Edward I Solomon.   

Abstract

Hydrogen bonding (H-bonding) is generally thought to play an important role in tuning the electronic structure and reactivity of metal-sulfur sites in proteins. To develop a quantitative understanding of this effect, S K-edge X-ray absorption spectroscopy (XAS) has been employed to directly probe ligand-metal bond covalency, where it has been found that protein active sites are significantly less covalent than their related model complexes. Sulfur K-edge XAS data are reported here on a series of P450 model complexes with increasing H-bonding to the ligated thiolate from its substituent. The XAS spectroscopic results show a dramatic decrease in preedge intensity. DFT calculations reproduce these effects and show that the observed changes are in fact solely due to H-bonding and not from the inductive effect of the substituent on the thiolate. These calculations also indicate that the H-bonding interaction in these systems is mainly dipolar in nature. The -2.5 kcal/mol energy of the H-bonding interaction was small relative to the large change in ligand-metal bond covalency (30%) observed in the data. A bond decomposition analysis of the total energy is developed to correlate the preedge intensity change to the change in Fe-S bonding interaction on H-bonding. This effect is greater for the reduced than the oxidized state, leading to a 260 mV increase in the redox potential. A simple model shows that E degrees should vary approximately linearly with the covalency of the Fe-S bond in the oxidized state, which can be determined directly from S K-edge XAS.

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Year:  2005        PMID: 16117545      PMCID: PMC2880190          DOI: 10.1021/ja0519031

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  24 in total

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  23 in total

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Journal:  J Am Chem Soc       Date:  2010-09-15       Impact factor: 15.419

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Authors:  Roman Davydov; Sangchoul Im; Muralidharan Shanmugam; William A Gunderson; Naw May Pearl; Brian M Hoffman; Lucy Waskell
Journal:  Biochemistry       Date:  2016-02-03       Impact factor: 3.162

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Journal:  Dalton Trans       Date:  2014-12-14       Impact factor: 4.390

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6.  Valence tautomerism in synthetic models of cytochrome P450.

Authors:  Pradip Kumar Das; Subhra Samanta; Ashley B McQuarters; Nicolai Lehnert; Abhishek Dey
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7.  Ultrahigh-resolution study on Pyrococcus abyssi rubredoxin: II. Introduction of an O-H...Sgamma-Fe hydrogen bond increased the reduction potential by 65 mV.

Authors:  Heiko Bönisch; Christian L Schmidt; Pierre Bianco; Rudolf Ladenstein
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8.  Spin Interconversion of Heme-Peroxo-Copper Complexes Facilitated by Intramolecular Hydrogen-Bonding Interactions.

Authors:  Andrew W Schaefer; Melanie A Ehudin; David A Quist; Joel A Tang; Kenneth D Karlin; Edward I Solomon
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9.  Sulfur K-edge X-ray absorption spectroscopy and density functional theory calculations on superoxide reductase: role of the axial thiolate in reactivity.

Authors:  Abhishek Dey; Francis E Jenney; Michael W W Adams; Michael K Johnson; Keith O Hodgson; Britt Hedman; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2007-09-22       Impact factor: 15.419

10.  Spectroscopic and DFT studies of second-sphere variants of the type 1 copper site in azurin: covalent and nonlocal electrostatic contributions to reduction potentials.

Authors:  Ryan G Hadt; Ning Sun; Nicholas M Marshall; Keith O Hodgson; Britt Hedman; Yi Lu; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2012-10-02       Impact factor: 15.419

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