Literature DB >> 8672487

Probing the functional role of two conserved active site aspartates in mouse adenosine deaminase.

V Sideraki1, K A Mohamedali, D K Wilson, Z Chang, R E Kellems, F A Quiocho, F B Rudolph.   

Abstract

Two adjacent aspartates, Asp 295 and Asp 296, playing major roles in the reaction catalyzed by mouse adenosine deaminase (mADA) were altered using site-directed mutagenesis. These mutants were expressed and purified from an ADA-deficient bacterial strain and characterized. Circular dichroism spectroscopy shows the mutants to have unperturbed secondary structure. Their zinc content compares well to that of wild-type enzyme. Changing Asp 295 to a glutamate decreases the kcat but does not alter the Km for adenosine, confirming the importance of this residue in the catalytic process and its minimal role in substrate binding. The crystal structure of the D295E mutant reveals a displacement of the catalytic water from the active site due to the longer glutamate side chain, resulting in the mutant's inability to turn over the substrate. In contrast, Asp 296 mutants exhibit markedly increased Km values, establishing this residue's critical role in substrate binding. The Asp 296->Ala mutation causes a 70-fold increase in the Km for adenosine and retains 0.001% of the wild-type kcat/Km value, whereas the ASP 296->Asn mutant has a 10-fold higher Km and retains 1% of the wild-type kcat/Km value. The structure of the D296A mutant shows that the impaired binding of substrate is caused by the loss of a single hydrogen bond between a carboxylate oxygen and N7 of the purine ring. These results and others discussed below are in agreement with the postulated role of the adjacent aspartates in the catalytic mechanism for mADA.

Entities:  

Mesh:

Substances:

Year:  1996        PMID: 8672487     DOI: 10.1021/bi952920d

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  11 in total

1.  Sulfur K-edge XAS and DFT calculations on P450 model complexes: effects of hydrogen bonding on electronic structure and redox potentials.

Authors:  Abhishek Dey; Taka-aki Okamura; Norikazu Ueyama; Britt Hedman; Keith O Hodgson; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2005-08-31       Impact factor: 15.419

2.  Pa0148 from Pseudomonas aeruginosa catalyzes the deamination of adenine.

Authors:  Alissa M Goble; Zhening Zhang; J Michael Sauder; Stephen K Burley; Subramanyam Swaminathan; Frank M Raushel
Journal:  Biochemistry       Date:  2011-07-06       Impact factor: 3.162

3.  Comparative genomic and expression analysis of the adenosine signaling pathway members in Xenopus.

Authors:  Alice Tocco; Benoît Pinson; Pierre Thiébaud; Nadine Thézé; Karine Massé
Journal:  Purinergic Signal       Date:  2014-10-16       Impact factor: 3.765

4.  Nickel(II) complexes stabilized by bis[N-(6-pivalamido-2-pyridylmethyl)]benzylamine: Synthesis and characterization of complexes stabilized by a hydrogen bonding network.

Authors:  Darla A Powell-Jia; Melinda T-N Pham; Joseph W Ziller; A S Borovik
Journal:  Inorganica Chim Acta       Date:  2010-05-13       Impact factor: 2.545

5.  The role of Zn2+ on the structure and stability of murine adenosine deaminase.

Authors:  Weiling Niu; Qin Shu; Zhiwei Chen; Scott Mathews; Enrico Di Cera; Carl Frieden
Journal:  J Phys Chem B       Date:  2010-09-03       Impact factor: 2.991

6.  Hydrogen-Deuterium Exchange within Adenosine Deaminase, a TIM Barrel Hydrolase, Identifies Networks for Thermal Activation of Catalysis.

Authors:  Shuaihua Gao; Emily J Thompson; Samuel L Barrow; Wenju Zhang; Anthony T Iavarone; Judith P Klinman
Journal:  J Am Chem Soc       Date:  2020-11-12       Impact factor: 15.419

7.  Purification and characterization of intestinal adenosine deaminase from mice.

Authors:  L S Singh; R Sharma
Journal:  Mol Cell Biochem       Date:  2000-01       Impact factor: 3.396

8.  S K-edge XAS and DFT calculations on square-planar NiII-thiolate complexes: effects of active and passive H-bonding.

Authors:  Abhishek Dey; Kayla N Green; Roxanne M Jenkins; Stephen P Jeffrey; Marcetta Darensbourg; Keith O Hodgson; Britt Hedman; Edward I Solomon
Journal:  Inorg Chem       Date:  2007-10-20       Impact factor: 5.165

9.  Structures of substrate- and inhibitor-bound adenosine deaminase from a human malaria parasite show a dramatic conformational change and shed light on drug selectivity.

Authors:  Eric T Larson; Wei Deng; Brian E Krumm; Alberto Napuli; Natascha Mueller; Wesley C Van Voorhis; Frederick S Buckner; Erkang Fan; Angela Lauricella; George DeTitta; Joseph Luft; Frank Zucker; Wim G J Hol; Christophe L M J Verlinde; Ethan A Merritt
Journal:  J Mol Biol       Date:  2008-06-24       Impact factor: 5.469

10.  Deamination of 6-aminodeoxyfutalosine in menaquinone biosynthesis by distantly related enzymes.

Authors:  Alissa M Goble; Rafael Toro; Xu Li; Argentina Ornelas; Hao Fan; Subramaniam Eswaramoorthy; Yury Patskovsky; Brandan Hillerich; Ron Seidel; Andrej Sali; Brian K Shoichet; Steven C Almo; Subramanyam Swaminathan; Martin E Tanner; Frank M Raushel
Journal:  Biochemistry       Date:  2013-09-04       Impact factor: 3.162

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.