Literature DB >> 20726554

Solvation effects on S K-edge XAS spectra of Fe-S proteins: normal and inverse effects on WT and mutant rubredoxin.

Ning Sun1, Abhishek Dey, Zhiguang Xiao, Anthony G Wedd, Keith O Hodgson, Britt Hedman, Edward I Solomon.   

Abstract

S K-edge X-ray absorption spectroscopy (XAS) was performed on wild type Cp rubredoxin and its Cys --> Ser mutants in both solution and lyophilized forms. For wild type rubredoxin and for the mutants where an interior cysteine residue (C6 or C39) is substituted by serine, a normal solvent effect is observed, that is, the S covalency increases upon lyophilization. For the mutants where a solvent accessible surface cysteine residue is substituted by serine, the S covalency decreases upon lyophilization which is an inverse solvent effect. Density functional theory (DFT) calculations reproduce these experimental results and show that the normal solvent effect reflects the covalency decrease due to solvent H-bonding to the surface thiolates and that the inverse solvent effect results from the covalency compensation from the interior thiolates. With respect to the Cys --> Ser substitution, the S covalency decreases. Calculations indicate that the stronger bonding interaction of the alkoxide with the Fe relative to that of thiolate increases the energy of the Fe d orbitals and reduces their bonding interaction with the remaining cysteines. The solvent effects support a surface solvent tuning contribution to electron transfer, and the Cys --> Ser result provides an explanation for the change in properties of related iron-sulfur sites with this mutation.

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Year:  2010        PMID: 20726554      PMCID: PMC2946794          DOI: 10.1021/ja102807x

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  20 in total

1.  Ironminus signSulfur Proteins with Nonredox Functions.

Authors:  Dennis H. Flint; Ronda M. Allen
Journal:  Chem Rev       Date:  1996-11-07       Impact factor: 60.622

2.  Sulfur K-edge XAS and DFT calculations on [Fe4S4]2+ clusters: effects of H-bonding and structural distortion on covalency and spin topology.

Authors:  Abhishek Dey; Cara L Roche; Marc A Walters; Keith O Hodgson; Britt Hedman; Edward I Solomon
Journal:  Inorg Chem       Date:  2005-11-14       Impact factor: 5.165

3.  Density-functional approximation for the correlation energy of the inhomogeneous electron gas.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1986-06-15

4.  Spectroscopic and DFT investigation of [M{HB(3,5-iPr2pz)3}(SC6F5)] (M = Mn, Fe, Co, Ni, Cu, and Zn) model complexes: periodic trends in metal-thiolate bonding.

Authors:  Serge I Gorelsky; Lipika Basumallick; Josh Vura-Weis; Ritimukta Sarangi; Keith O Hodgson; Britt Hedman; Kiyoshi Fujisawa; Edward I Solomon
Journal:  Inorg Chem       Date:  2005-07-11       Impact factor: 5.165

Review 5.  Iron-sulfur clusters: nature's modular, multipurpose structures.

Authors:  H Beinert; R H Holm; E Münck
Journal:  Science       Date:  1997-08-01       Impact factor: 47.728

6.  S K-edge X-ray absorption studies of tetranuclear iron-sulfur clusters: mu-sulfide bonding and its contribution to electron delocalization.

Authors:  T Glaser; K Rose; S E Shadle; B Hedman; K O Hodgson; E I Solomon
Journal:  J Am Chem Soc       Date:  2001-01-24       Impact factor: 15.419

7.  Ligand K-edge X-ray absorption spectroscopy: a direct probe of ligand-metal covalency.

Authors:  T Glaser; B Hedman; K O Hodgson; E I Solomon
Journal:  Acc Chem Res       Date:  2000-12       Impact factor: 22.384

8.  Insight into environmental effects on bonding and redox properties of [4Fe-4S] clusters in proteins.

Authors:  Shuqiang Niu; Toshiko Ichiye
Journal:  J Am Chem Soc       Date:  2009-04-29       Impact factor: 15.419

9.  Solvent tuning of electrochemical potentials in the active sites of HiPIP versus ferredoxin.

Authors:  Abhishek Dey; Francis E Jenney; Michael W W Adams; Elena Babini; Yasuhiro Takahashi; Keiichi Fukuyama; Keith O Hodgson; Britt Hedman; Edward I Solomon
Journal:  Science       Date:  2007-11-30       Impact factor: 47.728

10.  Application of NMRD to hydration of rubredoxin and a variant containing a (Cys-S)3FeIII(OH) site.

Authors:  Ivano Bertini; Claudio Luchinat; Kirill Nerinovski; Giacomo Parigi; Maddalena Cross; Zhiguang Xiao; Anthony G Wedd
Journal:  Biophys J       Date:  2003-01       Impact factor: 4.033

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  8 in total

Review 1.  Metalloproteins containing cytochrome, iron-sulfur, or copper redox centers.

Authors:  Jing Liu; Saumen Chakraborty; Parisa Hosseinzadeh; Yang Yu; Shiliang Tian; Igor Petrik; Ambika Bhagi; Yi Lu
Journal:  Chem Rev       Date:  2014-04-23       Impact factor: 60.622

2.  Using solution- and solid-state S K-edge X-ray absorption spectroscopy with density functional theory to evaluate M-S bonding for MS4(2-) (M = Cr, Mo, W) dianions.

Authors:  Angela C Olson; Jason M Keith; Enrique R Batista; Kevin S Boland; Scott R Daly; Stosh A Kozimor; Molly M MacInnes; Richard L Martin; Brian L Scott
Journal:  Dalton Trans       Date:  2014-12-14       Impact factor: 4.390

Review 3.  Mono- and binuclear non-heme iron chemistry from a theoretical perspective.

Authors:  Tibor András Rokob; Jakub Chalupský; Daniel Bím; Prokopis C Andrikopoulos; Martin Srnec; Lubomír Rulíšek
Journal:  J Biol Inorg Chem       Date:  2016-05-26       Impact factor: 3.358

4.  Incorporation of molybdenum in rubredoxin: models for mononuclear molybdenum enzymes.

Authors:  Biplab K Maiti; Luisa B Maia; Célia M Silveira; Smilja Todorovic; Cintia Carreira; Marta S P Carepo; Raquel Grazina; Isabel Moura; Sofia R Pauleta; José J G Moura
Journal:  J Biol Inorg Chem       Date:  2015-05-07       Impact factor: 3.358

5.  S K-edge XAS and DFT calculations on SAM dependent pyruvate formate-lyase activating enzyme: nature of interaction between the Fe4S4 cluster and SAM and its role in reactivity.

Authors:  Abhishek Dey; Yi Peng; William E Broderick; Britt Hedman; Keith O Hodgson; Joan B Broderick; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2011-10-28       Impact factor: 15.419

6.  Covalency between the uranyl ion and dithiophosphinate by sulfur K-edge X-ray absorption spectroscopy and density functional theory.

Authors:  Yusheng Zhang; Wuhua Duan; Qiang Wang; Lei Zheng; Jianchen Wang; Jing Chen; Taoxiang Sun
Journal:  J Synchrotron Radiat       Date:  2022-01-01       Impact factor: 2.616

7.  Spectroscopic and DFT studies of second-sphere variants of the type 1 copper site in azurin: covalent and nonlocal electrostatic contributions to reduction potentials.

Authors:  Ryan G Hadt; Ning Sun; Nicholas M Marshall; Keith O Hodgson; Britt Hedman; Yi Lu; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2012-10-02       Impact factor: 15.419

8.  Localized Electronic Structure of Nitrogenase FeMoco Revealed by Selenium K-Edge High Resolution X-ray Absorption Spectroscopy.

Authors:  Justin T Henthorn; Renee J Arias; Sergey Koroidov; Thomas Kroll; Dimosthenis Sokaras; Uwe Bergmann; Douglas C Rees; Serena DeBeer
Journal:  J Am Chem Soc       Date:  2019-08-15       Impact factor: 15.419

  8 in total

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