Literature DB >> 16094312

Replication and transcription: shaping the landscape of the genome.

Lyubomira Chakalova1, Emmanuel Debrand, Jennifer A Mitchell, Cameron S Osborne, Peter Fraser.   

Abstract

As the relationship between nuclear structure and function begins to unfold, a picture is emerging of a dynamic landscape that is centred on the two main processes that execute the regulated use and propagation of the genome. Rather than being subservient enzymatic activities, the replication and transcriptional machineries provide potent forces that organize the genome in three-dimensional nuclear space. Their activities provide opportunities for epigenetic changes that are required for differentiation and development. In addition, they impose physical constraints on the genome that might help to shape its evolution.

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Year:  2005        PMID: 16094312     DOI: 10.1038/nrg1673

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  81 in total

Review 1.  Organization of transcription.

Authors:  Lyubomira Chakalova; Peter Fraser
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-07-28       Impact factor: 10.005

Review 2.  Chromosome territories.

Authors:  Thomas Cremer; Marion Cremer
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-03       Impact factor: 10.005

3.  USF and NF-E2 cooperate to regulate the recruitment and activity of RNA polymerase II in the beta-globin gene locus.

Authors:  Zhuo Zhou; Xingguo Li; Changwang Deng; Paul A Ney; Suming Huang; Jörg Bungert
Journal:  J Biol Chem       Date:  2010-03-17       Impact factor: 5.157

4.  Computational methods for predicting 3D genomic organization from high-resolution chromosome conformation capture data.

Authors:  Kimberly MacKay; Anthony Kusalik
Journal:  Brief Funct Genomics       Date:  2020-07-29       Impact factor: 4.241

5.  Human gene organization driven by the coordination of replication and transcription.

Authors:  Maxime Huvet; Samuel Nicolay; Marie Touchon; Benjamin Audit; Yves d'Aubenton-Carafa; Alain Arneodo; Claude Thermes
Journal:  Genome Res       Date:  2007-08-03       Impact factor: 9.043

6.  Systems biology meets chromatin function: a report on the Fourth Elmau Conference on Nuclear Organization.

Authors:  Christophe Lavelle; Alex Sigal
Journal:  Chromosome Res       Date:  2007-01-26       Impact factor: 5.239

7.  GATA-1 modulates the chromatin structure and activity of the chicken alpha-globin 3' enhancer.

Authors:  Martín Escamilla-Del-Arenal; Félix Recillas-Targa
Journal:  Mol Cell Biol       Date:  2007-11-05       Impact factor: 4.272

8.  The three-dimensional structure of human interphase chromosomes is related to the transcriptome map.

Authors:  Sandra Goetze; Julio Mateos-Langerak; Hinco J Gierman; Wim de Leeuw; Osdilly Giromus; Mireille H G Indemans; Jan Koster; Vladan Ondrej; Rogier Versteeg; Roel van Driel
Journal:  Mol Cell Biol       Date:  2007-04-09       Impact factor: 4.272

9.  Single-cell c-myc gene expression in relationship to nuclear domains.

Authors:  Eva Bártová; Andrea Harnicarová; Jana Krejcí; Ludek Strasák; Stanislav Kozubek
Journal:  Chromosome Res       Date:  2008-03-07       Impact factor: 5.239

Review 10.  Multiple strategies for gene transfer, expression, knockdown, and chromatin influence in mammalian cell lines and transgenic animals.

Authors:  Félix Recillas-Targa
Journal:  Mol Biotechnol       Date:  2006-11       Impact factor: 2.695

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