Literature DB >> 17984219

GATA-1 modulates the chromatin structure and activity of the chicken alpha-globin 3' enhancer.

Martín Escamilla-Del-Arenal1, Félix Recillas-Targa.   

Abstract

Long-distance regulatory elements and local chromatin structure are critical for proper regulation of gene expression. Here we characterize the chromatin conformation of the chicken alpha-globin silencer-enhancer elements located 3' of the domain. We found a characteristic and erythrocyte-specific structure between the previously defined silencer and the enhancer, defined by two nuclease hypersensitive sites, which appear when the enhancer is active during erythroid differentiation. Fine mapping of these sites demonstrates the absence of a positioned nucleosome and the association of GATA-1. Functional analyses of episomal vectors, as well as stably integrated constructs, revealed that GATA-1 plays a major role in defining both the chromatin structure and the enhancer activity. We detected a progressive enrichment of histone acetylation on critical enhancer nuclear factor binding sites, in correlation with the formation of an apparent nucleosome-free region. On the basis of these results, we propose that the local chromatin structure of the chicken alpha-globin enhancer plays a central role in its capacity to differentially regulate alpha-globin gene expression during erythroid differentiation and development.

Entities:  

Mesh:

Substances:

Year:  2007        PMID: 17984219      PMCID: PMC2223419          DOI: 10.1128/MCB.00943-07

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  41 in total

1.  GATA-1 forms distinct activating and repressive complexes in erythroid cells.

Authors:  Patrick Rodriguez; Edgar Bonte; Jeroen Krijgsveld; Katarzyna E Kolodziej; Boris Guyot; Albert J R Heck; Paresh Vyas; Ernie de Boer; Frank Grosveld; John Strouboulis
Journal:  EMBO J       Date:  2005-05-26       Impact factor: 11.598

Review 2.  The dynamics of chromatin remodeling at promoters.

Authors:  Jane Mellor
Journal:  Mol Cell       Date:  2005-07-22       Impact factor: 17.970

3.  A genomic code for nucleosome positioning.

Authors:  Eran Segal; Yvonne Fondufe-Mittendorf; Lingyi Chen; AnnChristine Thåström; Yair Field; Irene K Moore; Ji-Ping Z Wang; Jonathan Widom
Journal:  Nature       Date:  2006-07-19       Impact factor: 49.962

Review 4.  Globin genes transcriptional switching, chromatin structure and linked lessons to epigenetics in cancer: a comparative overview.

Authors:  Georgina Guerrero; Paul Delgado-Olguín; Martín Escamilla-Del-Arenal; Mayra Furlan-Magaril; Eria Rebollar; Inti A De La Rosa-Velázquez; Ernesto Soto-Reyes; Héctor Rincón-Arano; Christian Valdes-Quezada; Viviana Valadez-Graham; Félix Recillas-Targa
Journal:  Comp Biochem Physiol A Mol Integr Physiol       Date:  2006-11-11       Impact factor: 2.320

5.  Chromatin domain activation via GATA-1 utilization of a small subset of dispersed GATA motifs within a broad chromosomal region.

Authors:  Hogune Im; Jeffrey A Grass; Kirby D Johnson; Shin-Il Kim; Meghan E Boyer; Anthony N Imbalzano; James J Bieker; Emery H Bresnick
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-14       Impact factor: 11.205

6.  Nucleosome positions predicted through comparative genomics.

Authors:  Ilya P Ioshikhes; Istvan Albert; Sara J Zanton; B Franklin Pugh
Journal:  Nat Genet       Date:  2006-09-10       Impact factor: 38.330

7.  Asymmetric positioning of nucleosomes and directional establishment of transcriptionally silent chromatin by Saccharomyces cerevisiae silencers.

Authors:  Yanfei Zou; Qun Yu; Xin Bi
Journal:  Mol Cell Biol       Date:  2006-08-14       Impact factor: 4.272

8.  CTCF mediates interchromosomal colocalization between Igf2/H19 and Wsb1/Nf1.

Authors:  Jian Qun Ling; Tao Li; Ji Fan Hu; Thanh H Vu; Hui Ling Chen; Xin Wen Qiu; Athena M Cherry; Andrew R Hoffman
Journal:  Science       Date:  2006-04-14       Impact factor: 47.728

9.  Constitutive nucleosome depletion and ordered factor assembly at the GRP78 promoter revealed by single molecule footprinting.

Authors:  Einav Nili Gal-Yam; Shinwu Jeong; Amos Tanay; Gerda Egger; Amy S Lee; Peter A Jones
Journal:  PLoS Genet       Date:  2006-09-22       Impact factor: 5.917

Review 10.  Replication and transcription: shaping the landscape of the genome.

Authors:  Lyubomira Chakalova; Emmanuel Debrand; Jennifer A Mitchell; Cameron S Osborne; Peter Fraser
Journal:  Nat Rev Genet       Date:  2005-09       Impact factor: 53.242

View more
  9 in total

1.  CTCF demarcates chicken embryonic α-globin gene autonomous silencing and contributes to adult stage-specific gene expression.

Authors:  Christian Valdes-Quezada; Cristian Arriaga-Canon; Yael Fonseca-Guzmán; Georgina Guerrero; Félix Recillas-Targa
Journal:  Epigenetics       Date:  2013-07-03       Impact factor: 4.528

2.  Cell-type selective chromatin remodeling defines the active subset of FOXA1-bound enhancers.

Authors:  Jérôme Eeckhoute; Mathieu Lupien; Clifford A Meyer; Michael P Verzi; Ramesh A Shivdasani; X Shirley Liu; Myles Brown
Journal:  Genome Res       Date:  2009-01-07       Impact factor: 9.043

3.  A long non-coding RNA promotes full activation of adult gene expression in the chicken α-globin domain.

Authors:  Cristian Arriaga-Canon; Yael Fonseca-Guzmán; Christian Valdes-Quezada; Rodrigo Arzate-Mejía; Georgina Guerrero; Félix Recillas-Targa
Journal:  Epigenetics       Date:  2013-11-06       Impact factor: 4.528

4.  Dynamic transcription factor activity profiles reveal key regulatory interactions during megakaryocytic and erythroid differentiation.

Authors:  Mark T Duncan; Seungjin Shin; Jia J Wu; Zachary Mays; Stanley Weng; Neda Bagheri; William M Miller; Lonnie D Shea
Journal:  Biotechnol Bioeng       Date:  2014-07-14       Impact factor: 4.530

Review 5.  Chromatin remodeling effects on enhancer activity.

Authors:  Estela García-González; Martín Escamilla-Del-Arenal; Rodrigo Arzate-Mejía; Félix Recillas-Targa
Journal:  Cell Mol Life Sci       Date:  2016-03-30       Impact factor: 9.261

6.  Genome-wide CTCF distribution in vertebrates defines equivalent sites that aid the identification of disease-associated genes.

Authors:  David Martin; Cristina Pantoja; Ana Fernández Miñán; Christian Valdes-Quezada; Eduardo Moltó; Fuencisla Matesanz; Ozren Bogdanović; Elisa de la Calle-Mustienes; Orlando Domínguez; Leila Taher; Mayra Furlan-Magaril; Antonio Alcina; Susana Cañón; María Fedetz; María A Blasco; Paulo S Pereira; Ivan Ovcharenko; Félix Recillas-Targa; Lluís Montoliu; Miguel Manzanares; Roderic Guigó; Manuel Serrano; Fernando Casares; José Luis Gómez-Skarmeta
Journal:  Nat Struct Mol Biol       Date:  2011-05-22       Impact factor: 15.369

7.  Dynamics of alpha-globin locus chromatin structure and gene expression during erythroid differentiation of human CD34(+) cells in culture.

Authors:  Milind C Mahajan; Subhradip Karmakar; Peter E Newburger; Diane S Krause; Sherman M Weissman
Journal:  Exp Hematol       Date:  2009-07-14       Impact factor: 3.084

8.  XNP/dATRX interacts with DREF in the chromatin to regulate gene expression.

Authors:  Viviana Valadez-Graham; Yasuhide Yoshioka; Oscar Velazquez; Akihito Kawamori; Martha Vázquez; Adina Neumann; Masamitsu Yamaguchi; Mario Zurita
Journal:  Nucleic Acids Res       Date:  2011-10-22       Impact factor: 16.971

9.  Remodeling of chromatin structure within the promoter is important for bmp-2-induced fgfr3 expression.

Authors:  Fenyong Sun; Qiongyu Chen; Songhai Yang; Qiuhui Pan; Ji Ma; Yang Wan; Chih-Hao Chang; An Hong
Journal:  Nucleic Acids Res       Date:  2009-04-28       Impact factor: 16.971

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.