Literature DB >> 16093679

APE-type non-LTR retrotransposons: determinants involved in target site recognition.

N Zingler1, O Weichenrieder, G G Schumann.   

Abstract

Non-long terminal repeat (Non-LTR) retrotransposons represent a diverse and widely distributed group of transposable elements and an almost ubiquitous component of eukaryotic genomes that has a major impact on evolution. Their copy number can range from a few to several million and they often make up a significant fraction of the genomes. The members of the dominating subtype of non-LTR retrotransposons code for an endonuclease with homology to apurinic/apyrimidinic endonucleases (APE), and are thus termed APE-type non-LTR retrotransposons. In the last decade both the number of identified non-LTR retrotransposons and our knowledge of biology and evolution of APE-type non-LTR retrotransposons has increased tremendously.

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Year:  2005        PMID： 16093679     DOI： 10.1159/000084959

Source DB:  PubMed          Journal:  Cytogenet Genome Res        ISSN： 1424-8581            Impact factor:   1.636


  16 in total

1.  Independently derived targeting of 28S rDNA by A- and D-clade R2 retrotransposons: Plasticity of integration mechanism.

Authors:  Blaine K Thompson; Shawn M Christensen
Journal:  Mob Genet Elements       Date:  2011-05

2.  Non-LTR retrotransposons in fungi.

Authors:  Olga Novikova; Victor Fet; Alexander Blinov
Journal:  Funct Integr Genomics       Date:  2008-08-02       Impact factor: 3.410

3.  Non-LTR retrotransposons encode noncanonical RRM domains in their first open reading frame.

Authors:  Elena Khazina; Oliver Weichenrieder
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-12       Impact factor: 11.205

4.  Evaluating different DNA binding domains to modulate L1 ORF2p-driven site-specific retrotransposition events in human cells.

Authors:  Catherine M Ade; Rebecca S Derbes; Bradley J Wagstaff; Sara B Linker; Travis B White; Dawn Deharo; Victoria P Belancio; Zoltán Ivics; Astrid M Roy-Engel
Journal:  Gene       Date:  2017-11-14       Impact factor: 3.688

5.  Rapid decay of unstable Leishmania mRNAs bearing a conserved retroposon signature 3'-UTR motif is initiated by a site-specific endonucleolytic cleavage without prior deadenylation.

Authors:  Michaela Müller; Prasad K Padmanabhan; Annie Rochette; Debdutta Mukherjee; Martin Smith; Carole Dumas; Barbara Papadopoulou
Journal:  Nucleic Acids Res       Date:  2010-05-07       Impact factor: 16.971

6.  Getting closer to a pre-vertebrate genome: the non-LTR retrotransposons of Branchiostoma floridae.

Authors:  Jon Permanyer; Ricard Albalat; Roser Gonzàlez-Duarte
Journal:  Int J Biol Sci       Date:  2006-04-10       Impact factor: 6.580

Review 7.  Structural features and mechanism of translocation of non-LTR retrotransposons in Candida albicans.

Authors:  Jingchen Jiang; Liuya Zhao; Lan Yan; Lulu Zhang; Yingying Cao; Yan Wang; Yuanying Jiang; Tianhua Yan; Yongbing Cao
Journal:  Virulence       Date:  2013-12-06       Impact factor: 5.882

8.  Endonuclease domain of the Drosophila melanogaster R2 non-LTR retrotransposon and related retroelements: a new model for transposition.

Authors:  Dmitry V Mukha; Elena G Pasyukova; Tatiana V Kapelinskaya; Arina S Kagramanova
Journal:  Front Genet       Date:  2013-04-26       Impact factor: 4.599

9.  Expression of a LINE-1 endonuclease variant in gastric cancer: its association with clinicopathological parameters.

Authors:  Gangshi Wang; Jie Gao; Haili Huang; Yu Tian; Liyan Xue; Weihua Wang; Weidi You; Hongwei Lian; Xiaojian Duan; Benyan Wu; Mengwei Wang
Journal:  BMC Cancer       Date:  2013-05-29       Impact factor: 4.430

10.  Determinants for DNA target structure selectivity of the human LINE-1 retrotransposon endonuclease.

Authors:  Kostas Repanas; Nora Zingler; Liliana E Layer; Gerald G Schumann; Anastassis Perrakis; Oliver Weichenrieder
Journal:  Nucleic Acids Res       Date:  2007-07-10       Impact factor: 16.971
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