Literature DB >> 16085903

Specificity of a Bacteroides thetaiotaomicron marker for human feces.

C Andrew Carson1, Jessica M Christiansen, Helen Yampara-Iquise, Verel W Benson, Claire Baffaut, Jerri V Davis, Robert R Broz, William B Kurtz, Wendi M Rogers, William H Fales.   

Abstract

A bacterial primer set, known to produce a 542-bp amplicon specific for Bacteroides thetaiotaomicron, generated this product in PCR with 1 ng of extracted DNA from 92% of 25 human fecal samples, 100% of 20 sewage samples, and 16% of 31 dog fecal samples. The marker was not detected in 1 ng of fecal DNA from 61 cows, 35 horses, 44 pigs, 24 chickens, 29 turkeys, and 17 geese.

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Year:  2005        PMID: 16085903      PMCID: PMC1183297          DOI: 10.1128/AEM.71.8.4945-4949.2005

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  26 in total

1.  Evaluation of different methods for the extraction of DNA from fungal conidia by quantitative competitive PCR analysis.

Authors:  R A Haugland; J L Heckman; L J Wymer
Journal:  J Microbiol Methods       Date:  1999-08       Impact factor: 2.363

2.  Identification of nonpoint sources of fecal pollution in coastal waters by using host-specific 16S ribosomal DNA genetic markers from fecal anaerobes.

Authors:  A E Bernhard; K G Field
Journal:  Appl Environ Microbiol       Date:  2000-04       Impact factor: 4.792

3.  Evaluation of rapid DNA extraction methods for the quantitative detection of fungi using real-time PCR analysis.

Authors:  Richard A Haugland; Nichole Brinkman; Stephen J Vesper
Journal:  J Microbiol Methods       Date:  2002-08       Impact factor: 2.363

4.  A PCR assay To discriminate human and ruminant feces on the basis of host differences in Bacteroides-Prevotella genes encoding 16S rRNA.

Authors:  A E Bernhard; K G Field
Journal:  Appl Environ Microbiol       Date:  2000-10       Impact factor: 4.792

Review 5.  Microbial source tracking: current methodology and future directions.

Authors:  Troy M Scott; Joan B Rose; Tracie M Jenkins; Samuel R Farrah; Jerzy Lukasik
Journal:  Appl Environ Microbiol       Date:  2002-12       Impact factor: 4.792

6.  Tiered approach for identification of a human fecal pollution source at a recreational beach: case study at Avalon Bay, Catalina Island, California.

Authors:  Alexandria B Boehm; Jed A Fuhrman; Robert D Mrse; Stanley B Grant
Journal:  Environ Sci Technol       Date:  2003-02-15       Impact factor: 9.028

7.  Identification of fecal Escherichia coli from humans and animals by ribotyping.

Authors:  C A Carson; B L Shear; M R Ellersieck; A Asfaw
Journal:  Appl Environ Microbiol       Date:  2001-04       Impact factor: 4.792

8.  Genetic characterization of Escherichia coli populations from host sources of fecal pollution by using DNA fingerprinting.

Authors:  Sandra L McLellan; Annette D Daniels; Alissa K Salmore
Journal:  Appl Environ Microbiol       Date:  2003-05       Impact factor: 4.792

9.  Geographic variability of Escherichia coli ribotypes from animals in Idaho and Georgia.

Authors:  Peter G Hartel; Jacob D Summer; Jennifer L Hill; J Victoria Collins; James A Entry; William I Segars
Journal:  J Environ Qual       Date:  2002 Jul-Aug       Impact factor: 2.751

Review 10.  Pathogenic human viruses in coastal waters.

Authors:  Dale W Griffin; Kim A Donaldson; John H Paul; Joan B Rose
Journal:  Clin Microbiol Rev       Date:  2003-01       Impact factor: 26.132

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  18 in total

1.  Application of Faecalibacterium 16S rDNA genetic marker for accurate identification of duck faeces.

Authors:  Da Sun; Chuanren Duan; Yaning Shang; Yunxia Ma; Lili Tan; Jun Zhai; Xu Gao; Jingsong Guo; Guixue Wang
Journal:  Environ Sci Pollut Res Int       Date:  2016-01-08       Impact factor: 4.223

Review 2.  Performance, design, and analysis in microbial source tracking studies.

Authors:  Donald M Stoeckel; Valerie J Harwood
Journal:  Appl Environ Microbiol       Date:  2007-02-16       Impact factor: 4.792

3.  Identification of bacterial DNA markers for the detection of human fecal pollution in water.

Authors:  Orin C Shanks; Jorge W Santo Domingo; Jingrang Lu; Catherine A Kelty; James E Graham
Journal:  Appl Environ Microbiol       Date:  2007-01-05       Impact factor: 4.792

4.  Bacteroidales diversity in ring-billed gulls (Laurus delawarensis) residing at Lake Michigan beaches.

Authors:  Sonja N Jeter; Colleen M McDermott; Patricia A Bower; Julie L Kinzelman; Melinda J Bootsma; Giles W Goetz; Sandra L McLellan
Journal:  Appl Environ Microbiol       Date:  2009-01-16       Impact factor: 4.792

5.  Molecular characterization of sewage-borne pathogens and detection of sewage markers in an urban stream in Caracas, Venezuela.

Authors:  W Q Betancourt; L Querales; Y F Sulbaran; J Rodriguez-Diaz; L Caraballo; F H Pujol
Journal:  Appl Environ Microbiol       Date:  2010-01-22       Impact factor: 4.792

6.  Diversity and population structure of sewage-derived microorganisms in wastewater treatment plant influent.

Authors:  S L McLellan; S M Huse; S R Mueller-Spitz; E N Andreishcheva; M L Sogin
Journal:  Environ Microbiol       Date:  2009-10-16       Impact factor: 5.491

7.  Temporal assessment of the impact of exposure to cow feces in two watersheds by multiple host-specific PCR assays.

Authors:  Yong-Jin Lee; Marirosa Molina; Jorge W Santo Domingo; Jonathan D Willis; Michael Cyterski; Dinku M Endale; Orin C Shanks
Journal:  Appl Environ Microbiol       Date:  2008-09-19       Impact factor: 4.792

8.  Evolutionary transitions in bacterial symbiosis.

Authors:  Joel L Sachs; Ryan G Skophammer; John U Regus
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-20       Impact factor: 11.205

9.  Microbial community analysis and identification of alternative host-specific fecal indicators in fecal and river water samples using pyrosequencing.

Authors:  Ju-Yong Jeong; Hee-Deung Park; Kyong-Hee Lee; Hang-Yeon Weon; Jong-Ok Ka
Journal:  J Microbiol       Date:  2011-09-02       Impact factor: 3.422

10.  Microbial Source Tracking Using Quantitative and Digital PCR To Identify Sources of Fecal Contamination in Stormwater, River Water, and Beach Water in a Great Lakes Area of Concern.

Authors:  Zachery R Staley; Rachel J Boyd; Phoenix Shum; Thomas A Edge
Journal:  Appl Environ Microbiol       Date:  2018-10-01       Impact factor: 4.792

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