Literature DB >> 18817416

A heavy-atom isotope effect and kinetic investigation of the hydrolysis of semicarbazide by urease from jack bean (Canavalia ensiformis).

John F Marlier1, Emily J Fogle, W W Cleland.   

Abstract

A kinetic investigation of the hydrolysis of semicarbazide by urease gives a relatively flat log V/ K versus pH plot between pH 5 and 8. A log V m versus pH plot shows a shift of the optimum V m toward lower pH when compared to urea. These results are explained in terms of the binding of the outer N of the NHNH 2 group in semicarbazide to an active site residue with a relatively low p K a ( approximately 6). Heavy-atom isotope effects for both leaving groups have been determined. For the NHNH 2 side, (15) k obs = 1.0045, whereas for the NH 2 side, (15) k obs = 1.0010. This is evidence that the NHNH 2 group leaves prior to the NH 2 group. Using previously published data from the urease-catalyzed hydrolysis of formamide, the commitment factors for semicarbazide and urea hydrolysis are estimated to be 2.7 and 1.2, respectively. The carbonyl-C isotope effect ( (13) k obs) equals 1.0357, which is consistent with the transition state occurring during either formation or breakdown of the tetrahedral intermediate.

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Year:  2008        PMID: 18817416      PMCID: PMC2663901          DOI: 10.1021/bi801338c

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  15 in total

1.  Multiple isotope effects on the acyl group transfer reactions of amides and esters.

Authors:  J F Marlier
Journal:  Acc Chem Res       Date:  2001-04       Impact factor: 22.384

2.  Crystallization and preliminary X-ray structure determination of jack bean urease with a bound antibody fragment.

Authors:  Louisa Sheridan; Carrie M Wilmot; Karen D Cromie; Paul van der Logt; Simon E V Phillips
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-01-24

3.  Multiple isotope effect study of the hydrolysis of formamide by urease from jack bean (Canavalia ensiformis).

Authors:  John F Marlier; W W Cleland
Journal:  Biochemistry       Date:  2006-08-15       Impact factor: 3.162

4.  Jack bean urease (EC 3.5.1.5). Demonstration of a carbamoyl-transfer reaction and inhibition by hydroxamic acids.

Authors:  R L Blakeley; J A Hinds; H E Kunze; E C Webb; B Zerner
Journal:  Biochemistry       Date:  1969-05       Impact factor: 3.162

5.  A new proposal for urease mechanism based on the crystal structures of the native and inhibited enzyme from Bacillus pasteurii: why urea hydrolysis costs two nickels.

Authors:  S Benini; W R Rypniewski; K S Wilson; S Miletti; S Ciurli; S Mangani
Journal:  Structure       Date:  1999-02-15       Impact factor: 5.006

6.  Kinetic and structural characterization of urease active site variants.

Authors:  M A Pearson; I S Park; R A Schaller; L O Michel; P A Karplus; R P Hausinger
Journal:  Biochemistry       Date:  2000-07-25       Impact factor: 3.162

7.  Jack bean (Canavalia ensiformis) urease. Probing acid-base groups of the active site by pH variation.

Authors:  Barbara Krajewska; Stefano Ciurli
Journal:  Plant Physiol Biochem       Date:  2005-07       Impact factor: 4.270

8.  The burden borne by urease.

Authors:  Brian P Callahan; Yang Yuan; Richard Wolfenden
Journal:  J Am Chem Soc       Date:  2005-08-10       Impact factor: 15.419

9.  Site-directed mutagenesis of the active site cysteine in Klebsiella aerogenes urease.

Authors:  P R Martin; R P Hausinger
Journal:  J Biol Chem       Date:  1992-10-05       Impact factor: 5.157

10.  Jack bean urease (EC 3.5.1.5). V. On the mechanism of action of urease on urea, formamide, acetamide, N-methylurea, and related compounds.

Authors:  N E Dixon; P W Riddles; C Gazzola; R L Blakeley; B Zerner
Journal:  Can J Biochem       Date:  1980-12
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  2 in total

1.  A kinetic and isotope effect investigation of the urease-catalyzed hydrolysis of hydroxyurea.

Authors:  John F Marlier; Lori I Robins; Kathryn A Tucker; Jill Rawlings; Mark A Anderson; W W Cleland
Journal:  Biochemistry       Date:  2010-09-21       Impact factor: 3.162

2.  Kinetic isotope effects in asymmetric reactions.

Authors:  Thomas Giagou; Matthew P Meyer
Journal:  Chemistry       Date:  2010-09-17       Impact factor: 5.236

  2 in total

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