Literature DB >> 12371854

Solution NMR techniques for large molecular and supramolecular structures.

Roland Riek1, Jocelyne Fiaux, Eric B Bertelsen, Arthur L Horwich, Kurt Wuthrich.   

Abstract

Transverse relaxation-optimized spectroscopy (TROSY) or generation of heteronuclear multiple quantum coherences during the frequency labeling period and TROSY during the acquisition period have been combined either with cross-correlated relaxation-induced polarization transfer (CRIPT) or cross-correlated relaxation-enhanced polarization transfer (CRINEPT) to obtain two-dimensional (2D) solution NMR correlation spectra of (15)N,(2)H-labeled homo-oligomeric macromolecules with molecular weights from 110 to 800 kDa. With the experimental conditions used, the line widths of the TROSY-components of the (1)H- and (15)N-signals were of the order of 60 Hz at 400 kDa, whereas, for structures of size 800 kDa, the line widths were about 75 Hz for (15)N and 110 Hz for (1)H. This paper describes the experimental schemes used and details of their setup for individual measurements. The performance of NMR experiments with large structures depends critically on the choice of the polarization transfer times, the relaxation delays between subsequent recordings, and the water-handling routines. Optimal transfer times for 2D [(15)N,(1)H]-CRIPT-TROSY experiments in H(2)O solutions were found to be 6 ms for a molecular weight of approximately 200 kDa, 2.8 ms for 400 kDa, and 1.4 ms for 800 kDa. These data validate theoretical predictions of inverse proportionality between optimal transfer time and size of the structure. The proton longitudinal relaxation times in H(2)O solution were found to be of the order of 0.8 s for structure sizes around 200 kDa, 0.4 s at 400 kDa, and 0.3 s at 800 kDa, which enabled the use of recycle times below 1 s. Since improper water handling results in severe signal loss, the water resonance was kept along the z-axis during the entire duration of the experiments by adjusting each water flip-back pulse individually.

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Year:  2002        PMID: 12371854     DOI: 10.1021/ja026763z

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  39 in total

1.  Nuclear magnetic resonance spectroscopy with the stringent substrate rhodanese bound to the single-ring variant SR1 of the E. coli chaperonin GroEL.

Authors:  Eda Koculi; Reto Horst; Arthur L Horwich; Kurt Wüthrich
Journal:  Protein Sci       Date:  2011-07-07       Impact factor: 6.725

2.  Model building of a protein-protein complexed structure using saturation transfer and residual dipolar coupling without paired intermolecular NOE.

Authors:  Tomoki Matsuda; Takahisa Ikegami; Nobuyuki Nakajima; Toshio Yamazaki; Haruki Nakamura
Journal:  J Biomol NMR       Date:  2004-07       Impact factor: 2.835

3.  Disentangling multidimensional femtosecond spectra of excitons by pulse shaping with coherent control.

Authors:  Darius Abramavicius; Shaul Mukamel
Journal:  J Chem Phys       Date:  2004-05-08       Impact factor: 3.488

Review 4.  Enlightening molecular mechanisms through study of protein interactions.

Authors:  Josep Rizo; Michael K Rosen; Kevin H Gardner
Journal:  J Mol Cell Biol       Date:  2012-06-26       Impact factor: 6.216

5.  Cotranslational structure acquisition of nascent polypeptides monitored by NMR spectroscopy.

Authors:  Cédric Eichmann; Steffen Preissler; Roland Riek; Elke Deuerling
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-03       Impact factor: 11.205

6.  Efficient segmental isotope labeling of multi-domain proteins using Sortase A.

Authors:  Lee Freiburger; Miriam Sonntag; Janosch Hennig; Jian Li; Peijian Zou; Michael Sattler
Journal:  J Biomol NMR       Date:  2015-08-30       Impact factor: 2.835

7.  Direct NMR observation of a substrate protein bound to the chaperonin GroEL.

Authors:  Reto Horst; Eric B Bertelsen; Jocelyne Fiaux; Gerhard Wider; Arthur L Horwich; Kurt Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-22       Impact factor: 11.205

Review 8.  First glimpses of a chaperonin-bound folding intermediate.

Authors:  Joanna F Swain; Lila M Gierasch
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-19       Impact factor: 11.205

9.  Extended flip-back schemes for sensitivity enhancement in multidimensional HSQC-type out-and-back experiments.

Authors:  Tammo Diercks; Mark Daniels; Robert Kaptein
Journal:  J Biomol NMR       Date:  2005-12       Impact factor: 2.835

10.  Sensitivity enhancement in NMR of macromolecules by application of optimal control theory.

Authors:  Dominique P Frueh; Takuhiro Ito; Jr-Shin Li; Gerhard Wagner; Steffen J Glaser; Navin Khaneja
Journal:  J Biomol NMR       Date:  2005-05       Impact factor: 2.835

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