Literature DB >> 16041480

Sensitivity enhancement in NMR of macromolecules by application of optimal control theory.

Dominique P Frueh1, Takuhiro Ito, Jr-Shin Li, Gerhard Wagner, Steffen J Glaser, Navin Khaneja.   

Abstract

NMR of macromolecules is limited by large transverse relaxation rates. In practice, this results in low efficiency of coherence transfer steps in multidimensional NMR experiments, leading to poor sensitivity and long acquisition times. The efficiency of coherence transfer can be maximized by design of relaxation optimized pulse sequences using tools from optimal control theory. In this paper, we demonstrate that this approach can be adopted for studies of large biological systems, such as the 800 kDa chaperone GroEL. For this system, the 1H-15N coherence transfer module presented here yields an average sensitivity enhancement of 20-25% for cross-correlated relaxation induced polarization transfer (CRIPT) experiments.

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Year:  2005        PMID: 16041480     DOI: 10.1007/s10858-005-3592-0

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  10 in total

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Authors:  A E Ferentz; G Wagner
Journal:  Q Rev Biophys       Date:  2000-02       Impact factor: 5.318

2.  Polarization transfer by cross-correlated relaxation in solution NMR with very large molecules.

Authors:  R Riek; G Wider; K Pervushin; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  1999-04-27       Impact factor: 11.205

3.  Optimal control of spin dynamics in the presence of relaxation.

Authors:  Navin Khaneja; Timo Reiss; Burkhard Luy; Steffen J Glaser
Journal:  J Magn Reson       Date:  2003-06       Impact factor: 2.229

4.  Boundary of quantum evolution under decoherence.

Authors:  Navin Khaneja; Burkhard Luy; Steffen J Glaser
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-31       Impact factor: 11.205

5.  Broadband relaxation-optimized polarization transfer in magnetic resonance.

Authors:  Navin Khaneja; Jr-Shin Li; Cindie Kehlet; Burkhard Luy; Steffen J Glaser
Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-04       Impact factor: 11.205

6.  Solution NMR techniques for large molecular and supramolecular structures.

Authors:  Roland Riek; Jocelyne Fiaux; Eric B Bertelsen; Arthur L Horwich; Kurt Wuthrich
Journal:  J Am Chem Soc       Date:  2002-10-16       Impact factor: 15.419

7.  Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution.

Authors:  K Pervushin; R Riek; G Wider; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-11       Impact factor: 11.205

8.  Quantitative investigation of dipole-CSA cross-correlated relaxation by ZQ/DQ spectroscopy.

Authors:  B Brutscher; N R Skrynnikov; T Bremi; R BrYschweiler; R R Ernst
Journal:  J Magn Reson       Date:  1998-02       Impact factor: 2.229

9.  Overexpression of trigger factor prevents aggregation of recombinant proteins in Escherichia coli.

Authors:  K Nishihara; M Kanemori; H Yanagi; T Yura
Journal:  Appl Environ Microbiol       Date:  2000-03       Impact factor: 4.792

10.  Long-range motional restrictions in a multidomain zinc-finger protein from anisotropic tumbling.

Authors:  R Brüschweiler; X Liao; P E Wright
Journal:  Science       Date:  1995-05-12       Impact factor: 47.728

  10 in total
  6 in total

1.  NMR study of the tetrameric KcsA potassium channel in detergent micelles.

Authors:  Jordan H Chill; John M Louis; Christopher Miller; Ad Bax
Journal:  Protein Sci       Date:  2006-03-07       Impact factor: 6.725

2.  Optimal pulse design in quantum control: a unified computational method.

Authors:  Jr-Shin Li; Justin Ruths; Tsyr-Yan Yu; Haribabu Arthanari; Gerhard Wagner
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-18       Impact factor: 11.205

Review 3.  Biomolecular NMR data analysis.

Authors:  Michael R Gryk; Jay Vyas; Mark W Maciejewski
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-05       Impact factor: 9.795

4.  Protein-Inhibitor Interaction Studies Using NMR.

Authors:  Rieko Ishima
Journal:  Appl NMR Spectrosc       Date:  2015

5.  Dynamics of antibody domains studied by solution NMR.

Authors:  Bang K Vu; Joseph D Walsh; Dimiter S Dimitrov; Rieko Ishima
Journal:  Methods Mol Biol       Date:  2009

6.  Exact broadband excitation of two-level systems by mapping spins to springs.

Authors:  Jr-Shin Li; Justin Ruths; Steffen J Glaser
Journal:  Nat Commun       Date:  2017-09-05       Impact factor: 14.919

  6 in total

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