Literature DB >> 16024807

Role for PSF in mediating transcriptional activator-dependent stimulation of pre-mRNA processing in vivo.

Emanuel Rosonina1, Joanna Y Y Ip, John A Calarco, Malina A Bakowski, Andrew Emili, Susan McCracken, Philip Tucker, C James Ingles, Benjamin J Blencowe.   

Abstract

In a recent study, we provided evidence that strong promoter-bound transcriptional activators result in higher levels of splicing and 3'-end cleavage of nascent pre-mRNA than do weak promoter-bound activators and that this effect of strong activators requires the carboxyl-terminal domain (CTD) of RNA polymerase II (pol II). In the present study, we have investigated the mechanism of activator- and CTD-mediated stimulation of pre-mRNA processing. Affinity chromatography experiments reveal that two factors previously implicated in the coupling of transcription and pre-mRNA processing, PSF and p54(nrb)/NonO, preferentially bind a strong rather than a weak activation domain. Elevated expression in human 293 cells of PSF bypasses the requirement for a strong activator to promote efficient splicing and 3'-end cleavage. Truncation of the pol II CTD, which consists of 52 repeats of the consensus heptapeptide sequence YSPTSPS, to 15 heptapeptide repeats prevents PSF-dependent stimulation of splicing and 3'-end cleavage. Moreover, PSF and p54(nrb)/NonO bind in vitro to the wild-type CTD but not to the truncated 15-repeat CTD, and domains in PSF that are required for binding to activators and to the CTD are also important for the stimulation of pre-mRNA processing. Interestingly, activator- and CTD-dependent stimulation of splicing mediated by PSF appears to primarily affect the removal of first introns. Collectively, these results suggest that the recruitment of PSF to activated promoters and the pol II CTD provides a mechanism by which transcription and pre-mRNA processing are coordinated within the cell.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 16024807      PMCID: PMC1190332          DOI: 10.1128/MCB.25.15.6734-6746.2005

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  73 in total

Review 1.  Transcription of eukaryotic protein-coding genes.

Authors:  T I Lee; R A Young
Journal:  Annu Rev Genet       Date:  2000       Impact factor: 16.830

Review 2.  Investigating RNA polymerase II carboxyl-terminal domain (CTD) phosphorylation.

Authors:  Benoît Palancade; Olivier Bensaude
Journal:  Eur J Biochem       Date:  2003-10

Review 3.  The mediator coactivator complex: functional and physical roles in transcriptional regulation.

Authors:  Brian A Lewis; Danny Reinberg
Journal:  J Cell Sci       Date:  2003-09-15       Impact factor: 5.285

4.  Transcriptional activators control splicing and 3'-end cleavage levels.

Authors:  Emanuel Rosonina; Malina A Bakowski; Susan McCracken; Benjamin J Blencowe
Journal:  J Biol Chem       Date:  2003-08-25       Impact factor: 5.157

5.  A slow RNA polymerase II affects alternative splicing in vivo.

Authors:  Manuel de la Mata; Claudio R Alonso; Sebastián Kadener; Juan P Fededa; Matías Blaustein; Federico Pelisch; Paula Cramer; David Bentley; Alberto R Kornblihtt
Journal:  Mol Cell       Date:  2003-08       Impact factor: 17.970

Review 6.  U2AF homology motifs: protein recognition in the RRM world.

Authors:  Clara L Kielkopf; Stephan Lücke; Michael R Green
Journal:  Genes Dev       Date:  2004-07-01       Impact factor: 11.361

Review 7.  Multiple links between transcription and splicing.

Authors:  Alberto R Kornblihtt; Manuel de la Mata; Juan Pablo Fededa; Manuel J Munoz; Guadalupe Nogues
Journal:  RNA       Date:  2004-10       Impact factor: 4.942

8.  Analysis of the requirement for RNA polymerase II CTD heptapeptide repeats in pre-mRNA splicing and 3'-end cleavage.

Authors:  Emanuel Rosonina; Benjamin J Blencowe
Journal:  RNA       Date:  2004-04       Impact factor: 4.942

9.  p54(nrb) associates with the 5' splice site within large transcription/splicing complexes.

Authors:  Sei Kameoka; Paula Duque; Maria M Konarska
Journal:  EMBO J       Date:  2004-04-01       Impact factor: 11.598

10.  The Hrp65 self-interaction is mediated by an evolutionarily conserved domain and is required for nuclear import of Hrp65 isoforms that lack a nuclear localization signal.

Authors:  Eva Kiesler; Francesc Miralles; Ann-Kristin Ostlund Farrants; Neus Visa
Journal:  J Cell Sci       Date:  2003-08-19       Impact factor: 5.285

View more
  61 in total

1.  The RNA polymerase C-terminal domain: a new role in spliceosome assembly.

Authors:  Charles J David; James L Manley
Journal:  Transcription       Date:  2011 Sep-Oct

2.  Global impact of RNA polymerase II elongation inhibition on alternative splicing regulation.

Authors:  Joanna Y Ip; Dominic Schmidt; Qun Pan; Arun K Ramani; Andrew G Fraser; Duncan T Odom; Benjamin J Blencowe
Journal:  Genome Res       Date:  2010-12-16       Impact factor: 9.043

3.  Phosphorylation by SR kinases regulates the binding of PTB-associated splicing factor (PSF) to the pre-mRNA polypyrimidine tract.

Authors:  Ching-Jung Huang; Zhaohua Tang; Ren-Jang Lin; Philip W Tucker
Journal:  FEBS Lett       Date:  2006-12-14       Impact factor: 4.124

4.  Functional coupling of last-intron splicing and 3'-end processing to transcription in vitro: the poly(A) signal couples to splicing before committing to cleavage.

Authors:  Frank Rigo; Harold G Martinson
Journal:  Mol Cell Biol       Date:  2007-10-29       Impact factor: 4.272

5.  Combinatorial control of signal-induced exon repression by hnRNP L and PSF.

Authors:  Alexis A Melton; Jason Jackson; Jiarong Wang; Kristen W Lynch
Journal:  Mol Cell Biol       Date:  2007-07-30       Impact factor: 4.272

6.  Splicing factors stimulate polyadenylation via USEs at non-canonical 3' end formation signals.

Authors:  Sven Danckwardt; Isabelle Kaufmann; Marc Gentzel; Konrad U Foerstner; Anne-Susan Gantzert; Niels H Gehring; Gabriele Neu-Yilik; Peer Bork; Walter Keller; Matthias Wilm; Matthias W Hentze; Andreas E Kulozik
Journal:  EMBO J       Date:  2007-04-26       Impact factor: 11.598

7.  HIFs enhance the transcriptional activation and splicing of adrenomedullin.

Authors:  Johnny A Sena; Liyi Wang; Matthew R Pawlus; Cheng-Jun Hu
Journal:  Mol Cancer Res       Date:  2014-02-12       Impact factor: 5.852

8.  Non-POU Domain-Containing Octamer-Binding Protein Negatively Regulates HIV-1 Infection in CD4(+) T Cells.

Authors:  Corine St Gelais; Jonathan Roger; Li Wu
Journal:  AIDS Res Hum Retroviruses       Date:  2015-04-06       Impact factor: 2.205

Review 9.  Dynamic integration of splicing within gene regulatory pathways.

Authors:  Ulrich Braunschweig; Serge Gueroussov; Alex M Plocik; Brenton R Graveley; Benjamin J Blencowe
Journal:  Cell       Date:  2013-03-14       Impact factor: 41.582

10.  EBV noncoding RNA EBER2 interacts with host RNA-binding proteins to regulate viral gene expression.

Authors:  Nara Lee; Therese A Yario; Jessica S Gao; Joan A Steitz
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-07       Impact factor: 11.205

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.