Literature DB >> 15998739

Stochastic model for Soj relocation dynamics in Bacillus subtilis.

Konstantin Doubrovinski1, Martin Howard.   

Abstract

The Bacillus subtilis Spo0J/Soj proteins, implicated in chromosome segregation and transcriptional regulation, show striking dynamics: Soj undergoes irregular relocations from pole to pole or nucleoid to nucleoid. Here, we report on a mathematical model of the Soj dynamics. Our model, which is closely based on the available experimental data, readily generates dynamic Soj relocations. We show that the irregularity of the relocations may be due to the stochastic nature of the underlying Spo0J/Soj interactions and diffusion. We propose explanations for the behavior of several Spo0J/Soj mutants, including the "freezing" of the Soj dynamics observed in filamentous cells. Our approach underlines the importance of incorporating stochastic effects when modeling spatiotemporal protein dynamics inside cells.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 15998739      PMCID: PMC1174977          DOI: 10.1073/pnas.0500529102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  37 in total

1.  Control of development by altered localization of a transcription factor in B. subtilis.

Authors:  J D Quisel; D C Lin; A D Grossman
Journal:  Mol Cell       Date:  1999-11       Impact factor: 17.970

2.  A dynamic model for determining the middle of Escherichia coli.

Authors:  Karsten Kruse
Journal:  Biophys J       Date:  2002-02       Impact factor: 4.033

3.  Dynamic compartmentalization of bacteria: accurate division in E. coli.

Authors:  M Howard; A D Rutenberg; S de Vet
Journal:  Phys Rev Lett       Date:  2001-12-10       Impact factor: 9.161

4.  Pattern formation in Escherichia coli: a model for the pole-to-pole oscillations of Min proteins and the localization of the division site.

Authors:  H Meinhardt; P A de Boer
Journal:  Proc Natl Acad Sci U S A       Date:  2001-12-04       Impact factor: 11.205

5.  Mechanisms of noise-resistance in genetic oscillators.

Authors:  José M G Vilar; Hao Yuan Kueh; Naama Barkai; Stanislas Leibler
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-23       Impact factor: 11.205

Review 6.  Dynamic proteins in bacteria.

Authors:  Joe Lutkenhaus
Journal:  Curr Opin Microbiol       Date:  2002-12       Impact factor: 7.934

7.  Stochastic gene expression in a single cell.

Authors:  Michael B Elowitz; Arnold J Levine; Eric D Siggia; Peter S Swain
Journal:  Science       Date:  2002-08-16       Impact factor: 47.728

8.  Soj antagonizes Spo0A activation of transcription in Bacillus subtilis.

Authors:  Brett N McLeod; George B Spiegelman
Journal:  J Bacteriol       Date:  2005-04       Impact factor: 3.490

9.  Genetic analysis of the chromosome segregation protein Spo0J of Bacillus subtilis: evidence for separate domains involved in DNA binding and interactions with Soj protein.

Authors:  S Autret; R Nair; J Errington
Journal:  Mol Microbiol       Date:  2001-08       Impact factor: 3.501

Review 10.  The concept of self-organization in cellular architecture.

Authors:  T Misteli
Journal:  J Cell Biol       Date:  2001-10-15       Impact factor: 10.539

View more
  9 in total

1.  Intra- and intercellular fluctuations in Min-protein dynamics decrease with cell length.

Authors:  Elisabeth Fischer-Friedrich; Giovanni Meacci; Joe Lutkenhaus; Hugues Chaté; Karsten Kruse
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-22       Impact factor: 11.205

2.  The diffusive finite state projection algorithm for efficient simulation of the stochastic reaction-diffusion master equation.

Authors:  Brian Drawert; Michael J Lawson; Linda Petzold; Mustafa Khammash
Journal:  J Chem Phys       Date:  2010-02-21       Impact factor: 3.488

3.  Effects of molecular noise on bistable protein distributions in rod-shaped bacteria.

Authors:  L Wettmann; M Bonny; K Kruse
Journal:  Interface Focus       Date:  2014-12-06       Impact factor: 3.906

4.  Perspective: Stochastic algorithms for chemical kinetics.

Authors:  Daniel T Gillespie; Andreas Hellander; Linda R Petzold
Journal:  J Chem Phys       Date:  2013-05-07       Impact factor: 3.488

5.  Deletion of the parA (soj) homologue in Pseudomonas aeruginosa causes ParB instability and affects growth rate, chromosome segregation, and motility.

Authors:  Krzysztof Lasocki; Aneta A Bartosik; Jolanta Mierzejewska; Christopher M Thomas; Grazyna Jagura-Burdzy
Journal:  J Bacteriol       Date:  2007-06-01       Impact factor: 3.490

Review 6.  An experimentalist's guide to computational modelling of the Min system.

Authors:  Karsten Kruse; Martin Howard; William Margolin
Journal:  Mol Microbiol       Date:  2007-03       Impact factor: 3.501

7.  Noise-induced Min phenotypes in E. coli.

Authors:  David Fange; Johan Elf
Journal:  PLoS Comput Biol       Date:  2006-05-18       Impact factor: 4.475

8.  Defining the role of ATP hydrolysis in mitotic segregation of bacterial plasmids.

Authors:  Yoan Ah-Seng; Jérôme Rech; David Lane; Jean-Yves Bouet
Journal:  PLoS Genet       Date:  2013-12-19       Impact factor: 5.917

9.  Influence of global gene regulatory networks on single cell heterogeneity of green fluorescent protein production in Bacillus subtilis.

Authors:  Haojie Cao; Oscar P Kuipers
Journal:  Microb Cell Fact       Date:  2018-08-30       Impact factor: 5.328

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.