Literature DB >> 17302810

An experimentalist's guide to computational modelling of the Min system.

Karsten Kruse1, Martin Howard, William Margolin.   

Abstract

Spatio-temporal oscillations of the Min proteins are essential for selecting the cell division site in Escherichia coli. These oscillations are a key example of a biological phenomenon that can only be understood on a systems level rather than on the level of its individual components. Here, we review the key concepts that mathematical modelling has added to our understanding of the Min system. While several different mechanisms have been proposed, in all cases the oscillations emerge from a dynamic instability of a uniform protein distribution. To generate this instability, however, the various mechanisms rely on different features of Min protein interactions and transport. We critically evaluate these mechanisms in light of recent experimental evidence. We also review the effects of fluctuations caused by low cellular concentration of Min proteins, and describe how stochastic effects may potentially influence Min protein dynamics.

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Year:  2007        PMID: 17302810      PMCID: PMC4758205          DOI: 10.1111/j.1365-2958.2007.05607.x

Source DB:  PubMed          Journal:  Mol Microbiol        ISSN: 0950-382X            Impact factor:   3.501


  27 in total

1.  Dynamic compartmentalization of bacteria: accurate division in E. coli.

Authors:  M Howard; A D Rutenberg; S de Vet
Journal:  Phys Rev Lett       Date:  2001-12-10       Impact factor: 9.161

2.  Pattern formation in Escherichia coli: a model for the pole-to-pole oscillations of Min proteins and the localization of the division site.

Authors:  H Meinhardt; P A de Boer
Journal:  Proc Natl Acad Sci U S A       Date:  2001-12-04       Impact factor: 11.205

3.  Exploring intracellular space: function of the Min system in round-shaped Escherichia coli.

Authors:  Brian D Corbin; Xuan-Chuan Yu; William Margolin
Journal:  EMBO J       Date:  2002-04-15       Impact factor: 11.598

4.  Pattern formation inside bacteria: fluctuations due to the low copy number of proteins.

Authors:  Martin Howard; Andrew D Rutenberg
Journal:  Phys Rev Lett       Date:  2003-03-27       Impact factor: 9.161

Review 5.  Dynamic proteins in bacteria.

Authors:  Joe Lutkenhaus
Journal:  Curr Opin Microbiol       Date:  2002-12       Impact factor: 7.934

Review 6.  FtsZ and the division of prokaryotic cells and organelles.

Authors:  William Margolin
Journal:  Nat Rev Mol Cell Biol       Date:  2005-11       Impact factor: 94.444

7.  Min-oscillations in Escherichia coli induced by interactions of membrane-bound proteins.

Authors:  Giovanni Meacci; Karsten Kruse
Journal:  Phys Biol       Date:  2005-06       Impact factor: 2.583

8.  A stochastic model of Min oscillations in Escherichia coli and Min protein segregation during cell division.

Authors:  Filipe Tostevin; Martin Howard
Journal:  Phys Biol       Date:  2005-11-29       Impact factor: 2.583

9.  Division site selection in Escherichia coli involves dynamic redistribution of Min proteins within coiled structures that extend between the two cell poles.

Authors:  Yu-Ling Shih; Trung Le; Lawrence Rothfield
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-23       Impact factor: 11.205

10.  Noise-induced Min phenotypes in E. coli.

Authors:  David Fange; Johan Elf
Journal:  PLoS Comput Biol       Date:  2006-05-18       Impact factor: 4.475

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  32 in total

1.  Intra- and intercellular fluctuations in Min-protein dynamics decrease with cell length.

Authors:  Elisabeth Fischer-Friedrich; Giovanni Meacci; Joe Lutkenhaus; Hugues Chaté; Karsten Kruse
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-22       Impact factor: 11.205

2.  Membrane potential is important for bacterial cell division.

Authors:  Henrik Strahl; Leendert W Hamoen
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-21       Impact factor: 11.205

3.  Appropriation of the MinD protein-interaction motif by the dimeric interface of the bacterial cell division regulator MinE.

Authors:  Houman Ghasriani; Thierry Ducat; Chris T Hart; Fatima Hafizi; Nina Chang; Ali Al-Baldawi; Saud H Ayed; Patrik Lundström; Jo-Anne R Dillon; Natalie K Goto
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-11       Impact factor: 11.205

4.  Bacterial polarity.

Authors:  Grant R Bowman; Anna I Lyuksyutova; Lucy Shapiro
Journal:  Curr Opin Cell Biol       Date:  2010-11-20       Impact factor: 8.382

5.  The Min oscillator uses MinD-dependent conformational changes in MinE to spatially regulate cytokinesis.

Authors:  Kyung-Tae Park; Wei Wu; Kevin P Battaile; Scott Lovell; Todd Holyoak; Joe Lutkenhaus
Journal:  Cell       Date:  2011-08-05       Impact factor: 41.582

6.  Dynamic instability-driven centering/segregating mechanism in bacteria.

Authors:  Kirstin R Purdy Drew; Joe Pogliano
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-17       Impact factor: 11.205

7.  Min protein patterns emerge from rapid rebinding and membrane interaction of MinE.

Authors:  Martin Loose; Elisabeth Fischer-Friedrich; Christoph Herold; Karsten Kruse; Petra Schwille
Journal:  Nat Struct Mol Biol       Date:  2011-04-24       Impact factor: 15.369

Review 8.  Cytokinesis and the contractile ring in fission yeast: towards a systems-level understanding.

Authors:  Mark Bathe; Fred Chang
Journal:  Trends Microbiol       Date:  2009-12-01       Impact factor: 17.079

9.  Direct MinE-membrane interaction contributes to the proper localization of MinDE in E. coli.

Authors:  Cheng-Wei Hsieh; Ti-Yu Lin; Hsin-Mei Lai; Chu-Chi Lin; Ting-Sung Hsieh; Yu-Ling Shih
Journal:  Mol Microbiol       Date:  2009-12-16       Impact factor: 3.501

10.  The smallest chemical reaction system with bistability.

Authors:  Thomas Wilhelm
Journal:  BMC Syst Biol       Date:  2009-09-08
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