Literature DB >> 15987893

Solution structure of thioredoxin h1 from Arabidopsis thaliana.

Francis C Peterson1, Betsy L Lytle, Sujatha Sampath, Dmitriy Vinarov, Ejan Tyler, Mark Shahan, John L Markley, Brian F Volkman.   

Abstract

Present in virtually every species, thioredoxins catalyze disulfide/dithiol exchange with various substrate proteins. While the human genome contains a single thioredoxin gene, plant thioredoxins are a complex protein family. A total of 19 different thioredoxin genes in six subfamilies has emerged from analysis of the Arabidopsis thaliana genome. Some function specifically in mitochondrial and chloroplast redox signaling processes, but target substrates for a group of eight thioredoxin proteins comprising the h subfamily are largely uncharacterized. In the course of a structural genomics effort directed at the recently completed A. thaliana genome, we determined the structure of thioredoxin h1 (At3g51030.1) in the oxidized state. The structure, defined by 1637 NMR-derived distance and torsion angle constraints, displays the conserved thioredoxin fold, consisting of a five-stranded beta-sheet flanked by four helices. Redox-dependent chemical shift perturbations mapped primarily to the conserved WCGPC active-site sequence and other nearby residues, but distant regions of the C-terminal helix were also affected by reduction of the active-site disulfide. Comparisons of the oxidized A. thaliana thioredoxin h1 structure with an h-type thioredoxin from poplar in the reduced state revealed structural differences in the C-terminal helix but no major changes in the active site conformation.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 15987893      PMCID: PMC2279331          DOI: 10.1110/ps.051477905

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  28 in total

1.  Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA.

Authors:  Torsten Herrmann; Peter Güntert; Kurt Wüthrich
Journal:  J Mol Biol       Date:  2002-05-24       Impact factor: 5.469

2.  Target proteins of the cytosolic thioredoxins in Arabidopsis thaliana.

Authors:  Daisuke Yamazaki; Ken Motohashi; Takeshi Kasama; Yukichi Hara; Toru Hisabori
Journal:  Plant Cell Physiol       Date:  2004-01       Impact factor: 4.927

3.  The Xplor-NIH NMR molecular structure determination package.

Authors:  Charles D Schwieters; John J Kuszewski; Nico Tjandra; G Marius Clore
Journal:  J Magn Reson       Date:  2003-01       Impact factor: 2.229

4.  FATCAT: a web server for flexible structure comparison and structure similarity searching.

Authors:  Yuzhen Ye; Adam Godzik
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

5.  Using NMRView to visualize and analyze the NMR spectra of macromolecules.

Authors:  Bruce A Johnson
Journal:  Methods Mol Biol       Date:  2004

6.  Solution structure of a natural CPPC active site variant, the reduced form of thioredoxin h1 from poplar.

Authors:  Nicolas Coudevylle; Aurélien Thureau; Christine Hemmerlin; Eric Gelhaye; Jean-Pierre Jacquot; Manh-Thong Cung
Journal:  Biochemistry       Date:  2005-02-15       Impact factor: 3.162

7.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology.

Authors:  G Cornilescu; F Delaglio; A Bax
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

8.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

9.  Microscopic pKa values of Escherichia coli thioredoxin.

Authors:  P T Chivers; K E Prehoda; B F Volkman; B M Kim; J L Markley; R T Raines
Journal:  Biochemistry       Date:  1997-12-02       Impact factor: 3.162

10.  Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxation.

Authors:  N A Farrow; R Muhandiram; A U Singer; S M Pascal; C M Kay; G Gish; S E Shoelson; T Pawson; J D Forman-Kay; L E Kay
Journal:  Biochemistry       Date:  1994-05-17       Impact factor: 3.162

View more
  7 in total

1.  Binding site identification and structure determination of protein-ligand complexes by NMR a semiautomated approach.

Authors:  Joshua J Ziarek; Francis C Peterson; Betsy L Lytle; Brian F Volkman
Journal:  Methods Enzymol       Date:  2011       Impact factor: 1.600

2.  Solution structures of Mycobacterium tuberculosis thioredoxin C and models of intact thioredoxin system suggest new approaches to inhibitor and drug design.

Authors:  Andrew L Olson; Terrence S Neumann; Sheng Cai; Daniel S Sem
Journal:  Proteins       Date:  2013-01-15

3.  Solution NMR structures of oxidized and reduced Ehrlichia chaffeensis thioredoxin: NMR-invisible structure owing to backbone dynamics.

Authors:  Garry W Buchko; Stephen N Hewitt; Wesley C Van Voorhis; Peter J Myler
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2018-01-01       Impact factor: 1.056

4.  Crystal structures of barley thioredoxin h isoforms HvTrxh1 and HvTrxh2 reveal features involved in protein recognition and possibly in discriminating the isoform specificity.

Authors:  Kenji Maeda; Per Hägglund; Christine Finnie; Birte Svensson; Anette Henriksen
Journal:  Protein Sci       Date:  2008-04-18       Impact factor: 6.725

Review 5.  Focus on Nitric Oxide Homeostasis: Direct and Indirect Enzymatic Regulation of Protein Denitrosation Reactions in Plants.

Authors:  Patrick Treffon; Elizabeth Vierling
Journal:  Antioxidants (Basel)       Date:  2022-07-21

6.  BioMagResBank.

Authors:  Eldon L Ulrich; Hideo Akutsu; Jurgen F Doreleijers; Yoko Harano; Yannis E Ioannidis; Jundong Lin; Miron Livny; Steve Mading; Dimitri Maziuk; Zachary Miller; Eiichi Nakatani; Christopher F Schulte; David E Tolmie; R Kent Wenger; Hongyang Yao; John L Markley
Journal:  Nucleic Acids Res       Date:  2007-11-04       Impact factor: 16.971

7.  The specificity of thioredoxins and glutaredoxins is determined by electrostatic and geometric complementarity.

Authors:  Carsten Berndt; Jens-Dirk Schwenn; Christopher Horst Lillig
Journal:  Chem Sci       Date:  2015-09-09       Impact factor: 9.825

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.