Literature DB >> 15961544

Single-file electrophoretic transport and counting of individual DNA molecules in surfactant nanotubes.

Michal Tokarz1, Björn Akerman, Jessica Olofsson, Jean-Francois Joanny, Paul Dommersnes, Owe Orwar.   

Abstract

We demonstrate a complete nanotube electrophoresis system (nanotube radii in the range of 50 to 150 nm) based on lipid membranes, comprising DNA injection, single-molecule transport, and single-molecule detection. Using gel-capped electrodes, electrophoretic single-file transport of fluorescently labeled dsDNA molecules is observed inside nanotubes. The strong confinement to a channel of molecular dimensions ensures a detection efficiency close to unity and identification of DNA size from its linear relation to the integrated peak intensity. In addition to constituting a nanotechnological device for identification and quantification of single macromolecules or biopolymers, this system provides a method to study their conformational dynamics, reaction kinetics, and transport in cell-like environments.

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Year:  2005        PMID: 15961544      PMCID: PMC1166592          DOI: 10.1073/pnas.0500081102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  21 in total

1.  DNA fragment sizing by single molecule detection in submicrometer-sized closed fluidic channels.

Authors:  Mathieu Foquet; Jonas Korlach; Warren Zipfel; Watt W Webb; Harold G Craighead
Journal:  Anal Chem       Date:  2002-03-15       Impact factor: 6.986

2.  Confinement-induced entropic recoil of single DNA molecules in a nanofluidic structure.

Authors:  S W P Turner; M Cabodi; H G Craighead
Journal:  Phys Rev Lett       Date:  2002-03-12       Impact factor: 9.161

3.  Electrophoresis in nanometer inner diameter capillaries with electrochemical detection.

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Journal:  Anal Chem       Date:  2001-08-01       Impact factor: 6.986

4.  Transition from molecular chaos to coherent spiking of enzymic reactions in small spatial volumes.

Authors:  B Hess; A Mikhailov
Journal:  Biophys Chem       Date:  1996-02-08       Impact factor: 2.352

Review 5.  Self-organizing molecular networks.

Authors:  P Stange; D Zanette; A Mikhailov; B Hess
Journal:  Biophys Chem       Date:  1998-05-05       Impact factor: 2.352

6.  Deformation of giant lipid vesicles by electric fields.

Authors: 
Journal:  Phys Rev A       Date:  1991-12-15       Impact factor: 3.140

7.  A microfabricated fluorescence-activated cell sorter.

Authors:  A Y Fu; C Spence; A Scherer; F H Arnold; S R Quake
Journal:  Nat Biotechnol       Date:  1999-11       Impact factor: 54.908

8.  Single polymer dynamics in an elongational flow.

Authors:  T T Perkins; D E Smith; S Chu
Journal:  Science       Date:  1997-06-27       Impact factor: 47.728

9.  Semiflexible polymers confined in soft tubes.

Authors:  F Brochard-Wyart; T Tanaka; N Borghi; P-G de Gennes
Journal:  Langmuir       Date:  2005-04-26       Impact factor: 3.882

10.  The free solution mobility of DNA.

Authors:  N C Stellwagen; C Gelfi; P G Righetti
Journal:  Biopolymers       Date:  1997-11       Impact factor: 2.505

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  6 in total

1.  Animal cells connected by nanotubes can be electrically coupled through interposed gap-junction channels.

Authors:  Xiang Wang; Margaret Lin Veruki; Nickolay V Bukoreshtliev; Espen Hartveit; Hans-Hermann Gerdes
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-20       Impact factor: 11.205

2.  Single nanopore transport of synthetic and biological polyelectrolytes in three-dimensional hybrid microfluidicnanofluidic devices.

Authors:  Travis L King; Enid N Gatimu; Paul W Bohn
Journal:  Biomicrofluidics       Date:  2009-01-02       Impact factor: 2.800

3.  Generation of phospholipid vesicle-nanotube networks and transport of molecules therein.

Authors:  Aldo Jesorka; Natalia Stepanyants; Haijiang Zhang; Bahanur Ortmen; Bodil Hakonen; Owe Orwar
Journal:  Nat Protoc       Date:  2011-05-19       Impact factor: 13.491

4.  Lipid tubule growth by osmotic pressure.

Authors:  Padmini Rangamani; Di Zhang; George Oster; Amy Q Shen
Journal:  J R Soc Interface       Date:  2013-09-04       Impact factor: 4.118

5.  The multiple faces of self-assembled lipidic systems.

Authors:  Guillaume Tresset
Journal:  PMC Biophys       Date:  2009-04-17

6.  Harnessing liquid-in-liquid printing and micropatterned substrates to fabricate 3-dimensional all-liquid fluidic devices.

Authors:  Wenqian Feng; Yu Chai; Joe Forth; Paul D Ashby; Thomas P Russell; Brett A Helms
Journal:  Nat Commun       Date:  2019-03-06       Impact factor: 14.919

  6 in total

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