Literature DB >> 15835986

Semiflexible polymers confined in soft tubes.

F Brochard-Wyart1, T Tanaka, N Borghi, P-G de Gennes.   

Abstract

We discuss various conformations for a polymer (of persistent length l(p)) confined into a deformable tube (the wall being a lipid bilayer with a certain surface tension sigma and curvature energy K). Our study assumes that there is no adsorption of the chain on the wall. Three states are compared: (a) an unperturbed tube, plus a confined chain, (b) a tube swollen in all the region surrounding the chain (similar to a snake eating a sausage), (c) a globule, a roughly spherical coil surrounded by a strongly deformed tube. We construct a (qualitative) phase diagram for these systems with two variables: the surface tension sigma and the degree of polymerization N. Our main conclusion is that "globules" usually win over "snakes".

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Year:  2005        PMID: 15835986     DOI: 10.1021/la0474114

Source DB:  PubMed          Journal:  Langmuir        ISSN: 0743-7463            Impact factor:   3.882


  18 in total

1.  Resolution limit for DNA barcodes in the Odijk regime.

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Journal:  Biomicrofluidics       Date:  2012-01-03       Impact factor: 2.800

2.  Single-file electrophoretic transport and counting of individual DNA molecules in surfactant nanotubes.

Authors:  Michal Tokarz; Björn Akerman; Jessica Olofsson; Jean-Francois Joanny; Paul Dommersnes; Owe Orwar
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-16       Impact factor: 11.205

3.  Directed self-organization of single DNA molecules in a nanoslit via embedded nanopit arrays.

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Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-02       Impact factor: 11.205

4.  Size regulation of ss-RNA viruses.

Authors:  Roya Zandi; Paul van der Schoot
Journal:  Biophys J       Date:  2009-01       Impact factor: 4.033

5.  Modeling the relaxation time of DNA confined in a nanochannel.

Authors:  Douglas R Tree; Yanwei Wang; Kevin D Dorfman
Journal:  Biomicrofluidics       Date:  2013-10-22       Impact factor: 2.800

Review 6.  Beyond gel electrophoresis: microfluidic separations, fluorescence burst analysis, and DNA stretching.

Authors:  Kevin D Dorfman; Scott B King; Daniel W Olson; Joel D P Thomas; Douglas R Tree
Journal:  Chem Rev       Date:  2012-11-12       Impact factor: 60.622

7.  Topological events in single molecules of E. coli DNA confined in nanochannels.

Authors:  Jeffrey G Reifenberger; Kevin D Dorfman; Han Cao
Journal:  Analyst       Date:  2015-05-20       Impact factor: 4.616

8.  Interplay between chain stiffness and excluded volume of semiflexible polymers confined in nanochannels.

Authors:  Abhiram Muralidhar; Douglas R Tree; Yanwei Wang; Kevin D Dorfman
Journal:  J Chem Phys       Date:  2014-02-28       Impact factor: 3.488

9.  Polymer Adsorption on Curved Surfaces: A Geometric Approach.

Authors:  Eli Hershkovits; Allen Tannenbaum; Rina Tannenbaum
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2007-08-23       Impact factor: 4.126

Review 10.  Bacteria as computers making computers.

Authors:  Antoine Danchin
Journal:  FEMS Microbiol Rev       Date:  2008-11-07       Impact factor: 16.408

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