Literature DB >> 15955912

Systems biology for the virtual plant.

Rodrigo A Gutiérrez1, Dennis E Shasha, Gloria M Coruzzi.   

Abstract

Mesh：

Year:  2005        PMID： 15955912      PMCID： PMC1150368          DOI： 10.1104/pp.104.900150

Source DB:  PubMed          Journal:  Plant Physiol        ISSN： 0032-0889            Impact factor:   8.340


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  9 in total

1.  A classification of tasks in bioinformatics.

Authors:  R Stevens; C Goble; P Baker; A Brass
Journal:  Bioinformatics       Date:  2001-02       Impact factor: 6.937

Review 2.  A new approach to decoding life: systems biology.

Authors:  T Ideker; T Galitski; L Hood
Journal:  Annu Rev Genomics Hum Genet       Date:  2001       Impact factor: 8.929

3.  Integrated genomic and proteomic analyses of a systematically perturbed metabolic network.

Authors:  T Ideker; V Thorsson; J A Ranish; R Christmas; J Buhler; J K Eng; R Bumgarner; D R Goodlett; R Aebersold; L Hood
Journal:  Science       Date:  2001-05-04       Impact factor: 47.728

4.  A gene expression map of the Arabidopsis root.

Authors:  Kenneth Birnbaum; Dennis E Shasha; Jean Y Wang; Jee W Jung; Georgina M Lambert; David W Galbraith; Philip N Benfey
Journal:  Science       Date:  2003-12-12       Impact factor: 47.728

5.  Achieving the in silico plant. Systems biology and the future of plant biological research.

Authors:  Natasha V Raikhel; Gloria M Coruzzi
Journal:  Plant Physiol       Date:  2003-06       Impact factor: 8.340

6.  Cytoscape: a software environment for integrated models of biomolecular interaction networks.

Authors:  Paul Shannon; Andrew Markiel; Owen Ozier; Nitin S Baliga; Jonathan T Wang; Daniel Ramage; Nada Amin; Benno Schwikowski; Trey Ideker
Journal:  Genome Res       Date:  2003-11       Impact factor: 9.043

7.  In silico biotechnology. Era of reconstruction and interrogation.

Authors:  Bernhard Ø Palsson
Journal:  Curr Opin Biotechnol       Date:  2004-02       Impact factor: 9.740

8.  Adaptive combinatorial design to explore large experimental spaces: approach and validation.

Authors:  L V Lejay; D E Shasha; P M Palenchar; A Y Kouranov; A A Cruikshank; M F Chou; G M Coruzzi
Journal:  Syst Biol (Stevenage)       Date:  2004-12

9.  A strategy for database interoperation.

Authors:  P D Karp
Journal:  J Comput Biol       Date:  1995       Impact factor: 1.479
  9 in total
  21 in total

Review 1.  Systems Biology for Smart Crops and Agricultural Innovation: Filling the Gaps between Genotype and Phenotype for Complex Traits Linked with Robust Agricultural Productivity and Sustainability.

Authors:  Anil Kumar; Rajesh Kumar Pathak; Sanjay Mohan Gupta; Vikram Singh Gaur; Dinesh Pandey
Journal:  OMICS       Date:  2015-10

Review 2.  Gene networks for nitrogen sensing, signaling, and response in Arabidopsis thaliana.

Authors:  Elena A Vidal; Karem P Tamayo; Rodrigo A Gutierrez
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2010 Nov-Dec

Review 3.  Systems approaches to identifying gene regulatory networks in plants.

Authors:  Terri A Long; Siobhan M Brady; Philip N Benfey
Journal:  Annu Rev Cell Dev Biol       Date:  2008       Impact factor: 13.827

4.  Quantitative trait loci and crop performance under abiotic stress: where do we stand?

Authors:  Nicholas C Collins; François Tardieu; Roberto Tuberosa
Journal:  Plant Physiol       Date:  2008-06       Impact factor: 8.340

5.  A systems view of responses to nutritional cues in Arabidopsis: toward a paradigm shift for predictive network modeling.

Authors:  Sandrine Ruffel; Gabriel Krouk; Gloria M Coruzzi
Journal:  Plant Physiol       Date:  2009-11-25       Impact factor: 8.340

Review 6.  Plant metabolic modeling: achieving new insight into metabolism and metabolic engineering.

Authors:  Kambiz Baghalian; Mohammad-Reza Hajirezaei; Falk Schreiber
Journal:  Plant Cell       Date:  2014-10-24       Impact factor: 11.277

7.  Plants are intelligent, here's how.

Authors:  Paco Calvo; Monica Gagliano; Gustavo M Souza; Anthony Trewavas
Journal:  Ann Bot       Date:  2020-01-08       Impact factor: 4.357

8.  VirtualPlant: a software platform to support systems biology research.

Authors:  Manpreet S Katari; Steve D Nowicki; Felipe F Aceituno; Damion Nero; Jonathan Kelfer; Lee Parnell Thompson; Juan M Cabello; Rebecca S Davidson; Arthur P Goldberg; Dennis E Shasha; Gloria M Coruzzi; Rodrigo A Gutiérrez
Journal:  Plant Physiol       Date:  2009-12-09       Impact factor: 8.340

9.  Members of BTB Gene Family of Scaffold Proteins Suppress Nitrate Uptake and Nitrogen Use Efficiency.

Authors:  Viviana Araus; Elena A Vidal; Tomas Puelma; Simón Alamos; Delphine Mieulet; Emmanuel Guiderdoni; Rodrigo A Gutiérrez
Journal:  Plant Physiol       Date:  2016-04-27       Impact factor: 8.340

10.  Gene networks and chromatin and transcriptional regulation of the phaseolin promoter in Arabidopsis.

Authors:  Sabarinath Sundaram; Sunee Kertbundit; Eugene V Shakirov; Lakshminarayan M Iyer; Miloslav Jurícek; Timothy C Hall
Journal:  Plant Cell       Date:  2013-07-19       Impact factor: 11.277
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