Literature DB >> 20890965

Gene networks for nitrogen sensing, signaling, and response in Arabidopsis thaliana.

Elena A Vidal1, Karem P Tamayo, Rodrigo A Gutierrez.   

Abstract

Nitrogen (N) is an essential macronutrient for plants. In nature, N cycles between different inorganic and organic forms some of which can serve as nutrients for plants. The inorganic N forms nitrate and ammonium are the most important sources of N for plants. However, plants can also uptake and use organic N forms such as amino acids and urea. Besides their nutritional role, nitrate and other forms of N can also act as signals that regulate the expression of hundreds of genes causing modulation of plant metabolism, physiology, growth, and development. Although many genes and processes affected by changes in external or internal N have been identified, the molecular mechanisms involved in N sensing and signaling are still poorly understood. Classic reverse and forward genetics and more recently the advent of genomic and systems approaches have helped to characterize some of the components of the signaling pathways directing Arabidopsis responses to N. Here, we provide an update on recent advances to identify the components involved in N sensing and signaling in Arabidopsis and their importance for the plant response to N.
© 2010 John Wiley & Sons, Inc.

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Year:  2010        PMID: 20890965      PMCID: PMC2951390          DOI: 10.1002/wsbm.87

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev Syst Biol Med        ISSN: 1939-005X


  75 in total

1.  Cytokinin activation of Arabidopsis cell division through a D-type cyclin.

Authors:  C Riou-Khamlichi; R Huntley; A Jacqmard; J A Murray
Journal:  Science       Date:  1999-03-05       Impact factor: 47.728

2.  Dual pathways for regulation of root branching by nitrate.

Authors:  H Zhang; A Jennings; P W Barlow; B G Forde
Journal:  Proc Natl Acad Sci U S A       Date:  1999-05-25       Impact factor: 11.205

Review 3.  MicroRNAs: genomics, biogenesis, mechanism, and function.

Authors:  David P Bartel
Journal:  Cell       Date:  2004-01-23       Impact factor: 41.582

4.  GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data.

Authors:  Andrey Rzhetsky; Ivan Iossifov; Tomohiro Koike; Michael Krauthammer; Pauline Kra; Mitzi Morris; Hong Yu; Pablo Ariel Duboué; Wubin Weng; W John Wilbur; Vasileios Hatzivassiloglou; Carol Friedman
Journal:  J Biomed Inform       Date:  2004-02       Impact factor: 6.317

5.  An Arabidopsis MADS box gene that controls nutrient-induced changes in root architecture.

Authors:  H Zhang; B G Forde
Journal:  Science       Date:  1998-01-16       Impact factor: 47.728

6.  Isolation and characterization of a cDNA that encodes maize uroporphyrinogen III methyltransferase, an enzyme involved in the synthesis of siroheme, which is prosthetic group of nitrite reductase.

Authors:  H Sakakibara; K Takei; T Sugiyama
Journal:  Plant J       Date:  1996-11       Impact factor: 6.417

7.  Transcript profiling in the chl1-5 mutant of Arabidopsis reveals a role of the nitrate transporter NRT1.1 in the regulation of another nitrate transporter, NRT2.1.

Authors:  Stéphane Muños; Céline Cazettes; Cécile Fizames; Frédéric Gaymard; Pascal Tillard; Marc Lepetit; Laurence Lejay; Alain Gojon
Journal:  Plant Cell       Date:  2004-08-19       Impact factor: 11.277

8.  AtIPT3 is a key determinant of nitrate-dependent cytokinin biosynthesis in Arabidopsis.

Authors:  Kentaro Takei; Nanae Ueda; Koh Aoki; Takashi Kuromori; Takashi Hirayama; Kazuo Shinozaki; Tomoyuki Yamaya; Hitoshi Sakakibara
Journal:  Plant Cell Physiol       Date:  2004-08       Impact factor: 4.927

9.  Computational identification of plant microRNAs and their targets, including a stress-induced miRNA.

Authors:  Matthew W Jones-Rhoades; David P Bartel
Journal:  Mol Cell       Date:  2004-06-18       Impact factor: 17.970

10.  NASCArrays: a repository for microarray data generated by NASC's transcriptomics service.

Authors:  David J Craigon; Nick James; John Okyere; Janet Higgins; Joan Jotham; Sean May
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

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  20 in total

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Authors:  Anthoni Pellizzaro; Thibault Clochard; Caroline Cukier; Céline Bourdin; Marjorie Juchaux; Françoise Montrichard; Steeve Thany; Valérie Raymond; Elisabeth Planchet; Anis M Limami; Marie-Christine Morère-Le Paven
Journal:  Plant Physiol       Date:  2014-11-03       Impact factor: 8.340

Review 2.  Root systems biology: integrative modeling across scales, from gene regulatory networks to the rhizosphere.

Authors:  Kristine Hill; Silvana Porco; Guillaume Lobet; Susan Zappala; Sacha Mooney; Xavier Draye; Malcolm J Bennett
Journal:  Plant Physiol       Date:  2013-10-18       Impact factor: 8.340

3.  Cross-Species Network Analysis Uncovers Conserved Nitrogen-Regulated Network Modules in Rice.

Authors:  Mariana Obertello; Stuti Shrivastava; Manpreet S Katari; Gloria M Coruzzi
Journal:  Plant Physiol       Date:  2015-06-04       Impact factor: 8.340

4.  Putative role of glutamine in the activation of CBL/CIPK signalling pathways during salt stress in sorghum.

Authors:  Rafael de Souza Miranda; Juan Carlos Alvarez-Pizarro; José Hélio Costa; Stelamaris de Oliveira Paula; José Tarquinio Prisco; Enéas Gomes-Filho
Journal:  Plant Signal Behav       Date:  2017-08-14

5.  Fine-tuning of root elongation by ethylene: a tool to study dynamic structure-function relationships between root architecture and nitrate absorption.

Authors:  Erwan Le Deunff; Julien Lecourt; Philippe Malagoli
Journal:  Ann Bot       Date:  2016-10-01       Impact factor: 4.357

Review 6.  A holistic view of nitrogen acquisition in plants.

Authors:  Tatiana Kraiser; Diana E Gras; Alvaro G Gutiérrez; Bernardo González; Rodrigo A Gutiérrez
Journal:  J Exp Bot       Date:  2011-01-14       Impact factor: 6.992

7.  A novel function of N-signaling in plants with special reference to Trichoderma interaction influencing plant growth, nitrogen use efficiency, and cross talk with plant hormones.

Authors:  Bansh Narayan Singh; Padmanabh Dwivedi; Birinchi Kumar Sarma; Gopal Shankar Singh; Harikesh Bahadur Singh
Journal:  3 Biotech       Date:  2019-02-28       Impact factor: 2.406

8.  Genome-wide identification and characterization of novel lncRNAs in Populus under nitrogen deficiency.

Authors:  Min Chen; Chenlu Wang; Hai Bao; Hui Chen; Yanwei Wang
Journal:  Mol Genet Genomics       Date:  2016-05-02       Impact factor: 3.291

9.  The mitochondrial folylpolyglutamate synthetase gene is required for nitrogen utilization during early seedling development in arabidopsis.

Authors:  Ling Jiang; Yanyan Liu; Hong Sun; Yueting Han; Jinglai Li; Changkun Li; Wenzhu Guo; Hongyan Meng; Sha Li; Yunliu Fan; Chunyi Zhang
Journal:  Plant Physiol       Date:  2012-11-05       Impact factor: 8.340

10.  Nitrate foraging by Arabidopsis roots is mediated by the transcription factor TCP20 through the systemic signaling pathway.

Authors:  Peizhu Guan; Rongchen Wang; Philippe Nacry; Ghislain Breton; Steve A Kay; Jose L Pruneda-Paz; Ariea Davani; Nigel M Crawford
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-06       Impact factor: 11.205

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