Literature DB >> 15928998

A set of HA-detected experiments for measuring scalar and residual dipolar couplings.

Peter Würtz1, Kai Fredriksson, Perttu Permi.   

Abstract

A new set of HCACO based three-dimensional NMR experiments for measuring residual dipolar couplings in proteins is presented. Using spin-state selection and editing in three dimensions, the experiments allow accurate measurement of intraresidual (1)D(C'H(alpha)), (1)D(C'C(alpha)) and (2)D(C'H(alpha)) scalar and residual dipolar couplings of (15) N/(13)C labeled proteins in D(2)O and dilute liquid crystals with minimal spectral crowding. The presented experiments are especially suitable for small or medium sized proline-rich proteins, or proteins that require high pH solvent conditions, making (1)H(N) detected experiments unattractive. In addition, the tetrahedral coordination of C(alpha) is superior to the planar peptide bond for determination of local alignments in partially structured polypeptides. For the efficient use of spectrometer time and to avoid complications arising from the varying magnitude of the alignment tensor during relatively long experiments, the (1)D(C'H(alpha)) and (2)D(C'H(alpha)) couplings can also be measured simultaneously in an E.COSY like manner with high accuracy. The pulse sequences are balanced for cross-correlation effects and minimized for relaxation losses. The pulse sequences are tested with a sample of (15)N/(13)C human ubiquitin. We find internuclear vector directions determined from the dipolar couplings to have an excellent correlation with those of ubiquitin's refined solution structure.

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Year:  2005        PMID: 15928998     DOI: 10.1007/s10858-005-2039-y

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  28 in total

1.  Two simple NMR experiments for measuring dipolar couplings in asparagine and glutamine side chains.

Authors:  P Permi
Journal:  J Magn Reson       Date:  2001-12       Impact factor: 2.229

2.  Alignment of chain-like molecules.

Authors:  Martti Louhivuori; Kai Fredriksson; Kimmo Pääkkönen; Perttu Permi; Arto Annila
Journal:  J Biomol NMR       Date:  2004-08       Impact factor: 2.835

3.  On the interpretation of residual dipolar couplings as reporters of molecular dynamics.

Authors:  Kai Fredriksson; Martti Louhivuori; Perttu Permi; Arto Annila
Journal:  J Am Chem Soc       Date:  2004-10-06       Impact factor: 15.419

4.  Integration of spin-state-selective excitation into 2D NMR correlation experiments with the heteronuclear ZQ/2Q pi rotations for 1JXH- resolved E.COSY-type measurements of heteronuclear coupling constants in proteins.

Authors:  A Meissner; J O Duus; O W Sørensen
Journal:  J Biomol NMR       Date:  1997-07       Impact factor: 2.835

Review 5.  Measurement of J and dipolar couplings from simplified two-dimensional NMR spectra.

Authors:  M Ottiger; F Delaglio; A Bax
Journal:  J Magn Reson       Date:  1998-04       Impact factor: 2.229

6.  A spin-state-selective experiment for measuring heteronuclear one-bond and homonuclear two-bond couplings from an HSQC-type spectrum.

Authors:  Perttu Permi
Journal:  J Biomol NMR       Date:  2002-01       Impact factor: 2.835

7.  1H-filtered correlation experiments for assignment and determination of coupling constants in backbone labelled proteins.

Authors:  Alexander W Giesen; Lynnette C Bae; Christa L Barrett; Jason A Chyba; Michael M Chaykovsky; Minn-Chang Cheng; Jenny H Murray; Ed J Oliver; Sarah M Sullivan; Jonathan Miles Brown; Steve W Homans
Journal:  J Biomol NMR       Date:  2002-01       Impact factor: 2.835

8.  Sequential assignment of proline-rich regions in proteins: application to modular binding domain complexes.

Authors:  V Kanelis; L Donaldson; D R Muhandiram; D Rotin; J D Forman-Kay; L E Kay
Journal:  J Biomol NMR       Date:  2000-03       Impact factor: 2.835

9.  Order matrix analysis of residual dipolar couplings using singular value decomposition.

Authors:  J A Losonczi; M Andrec; M W Fischer; J H Prestegard
Journal:  J Magn Reson       Date:  1999-06       Impact factor: 2.229

10.  Spin-locked multiple quantum coherence for signal enhancement in heteronuclear multidimensional NMR experiments.

Authors:  S Grzesiek; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

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  1 in total

1.  CoNSEnsX: an ensemble view of protein structures and NMR-derived experimental data.

Authors:  Annamária F Angyán; Balázs Szappanos; András Perczel; Zoltán Gáspári
Journal:  BMC Struct Biol       Date:  2010-10-29
  1 in total

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