Literature DB >> 11740905

Two simple NMR experiments for measuring dipolar couplings in asparagine and glutamine side chains.

P Permi1.   

Abstract

Residual dipolar couplings are now widely used for structure determination of biological macromolecules. Until recently, the main focus has been on measurement of dipolar couplings in the protein main chain. However, with the aim of more complete protein structure, it is also essential to have information on the orientation of protein side chains. In addition, residual dipolar couplings can potentially be employed to study molecular dynamics. In this Communication, two simple NH(2) and spin-state edited experiments are presented for rapid and convenient determination of five residual dipolar couplings from (15)N, (1)H correlation spectrum in asparagine and glutamine side chains. The pulse sequences are demonstrated on two proteins, 30.4-kDa Cel6A in diluted liquid crystal phase and 18-kDa human cardiac troponin C in water.

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Year:  2001        PMID: 11740905     DOI: 10.1006/jmre.2001.2449

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  5 in total

1.  Asparagine and glutamine side-chain conformation in solution and crystal: a comparison for hen egg-white lysozyme using residual dipolar couplings.

Authors:  Victoria A Higman; Jonathan Boyd; Lorna J Smith; Christina Redfield
Journal:  J Biomol NMR       Date:  2004-11       Impact factor: 2.835

2.  Accurate determination of leucine and valine side-chain conformations using U-[15N/13C/2H]/[1H-(methine/methyl)-Leu/Val] isotope labeling, NOE pattern recognition, and methine Cgamma-Hgamma/Cbeta-Hbeta residual dipolar couplings: application to the 34-kDa enzyme IIA(chitobiose).

Authors:  Chun Tang; Junji Iwahara; G Marius Clore
Journal:  J Biomol NMR       Date:  2005-10       Impact factor: 2.835

3.  A set of HA-detected experiments for measuring scalar and residual dipolar couplings.

Authors:  Peter Würtz; Kai Fredriksson; Perttu Permi
Journal:  J Biomol NMR       Date:  2005-04       Impact factor: 2.835

4.  Simultaneous NMR assignment of backbone and side chain amides in large proteins with IS-TROSY.

Authors:  Aizhuo Liu; Yue Li; Lishan Yao; Honggao Yan
Journal:  J Biomol NMR       Date:  2006-11-08       Impact factor: 2.835

5.  Measurement of residual dipolar couplings from 1Halpha to 13Calpha and 15N using a simple HNCA-based experiment.

Authors:  Perttu Permi
Journal:  J Biomol NMR       Date:  2003-12       Impact factor: 2.835

  5 in total

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