Literature DB >> 23748242

Zooming in on single active genes in living mammalian cells.

Sharon Yunger1, Alon Kalo, Pinhas Kafri, Jonathan Sheinberger, Erez Lavi, Noa Neufeld, Yaron Shav-Tal.   

Abstract

The kinetic aspects of RNA polymerase II as it transcribes mRNA have been revealed over the past decade by use of live-cell imaging and kinetic analyses. It is now possible to visualize polymerase molecules in action, and most importantly to detect and follow the mRNA product as it is generated in real time on active genes. Questions such as the speed at which mRNAs are transcribed or the number of polymerases running along a particular gene can be addressed at high temporal resolution. These kinetic studies highlight the tight regulation that genes encounter when moving between active and inactive states, and ultimately will shed light on the kinetic aspects of transcription of genes under perturbed states. The scientific pathway along which these findings were unearthed begins with the imaging of the action of hundreds of genes working in concert in fixed cells. The state of the art has reached the capability of analyzing the transcription of single alleles in living mammalian cells.

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Year:  2013        PMID: 23748242     DOI: 10.1007/s00418-013-1100-2

Source DB:  PubMed          Journal:  Histochem Cell Biol        ISSN: 0948-6143            Impact factor:   4.304


  44 in total

1.  The glucocorticoid receptor: rapid exchange with regulatory sites in living cells.

Authors:  J G McNally; W G Müller; D Walker; R Wolford; G L Hager
Journal:  Science       Date:  2000-02-18       Impact factor: 47.728

2.  FRAP reveals that mobility of oestrogen receptor-alpha is ligand- and proteasome-dependent.

Authors:  D L Stenoien; K Patel; M G Mancini; M Dutertre; C L Smith; B W O'Malley; M A Mancini
Journal:  Nat Cell Biol       Date:  2001-01       Impact factor: 28.824

3.  Single mRNA molecules demonstrate probabilistic movement in living mammalian cells.

Authors:  Dahlene Fusco; Nathalie Accornero; Brigitte Lavoie; Shailesh M Shenoy; Jean-Marie Blanchard; Robert H Singer; Edouard Bertrand
Journal:  Curr Biol       Date:  2003-01-21       Impact factor: 10.834

4.  Single-allele analysis of transcription kinetics in living mammalian cells.

Authors:  Sharon Yunger; Liat Rosenfeld; Yuval Garini; Yaron Shav-Tal
Journal:  Nat Methods       Date:  2010-07-18       Impact factor: 28.547

5.  The life of an mRNA in space and time.

Authors:  Ya'ara Ben-Ari; Yehuda Brody; Noa Kinor; Amir Mor; Toshiro Tsukamoto; David L Spector; Robert H Singer; Yaron Shav-Tal
Journal:  J Cell Sci       Date:  2010-04-27       Impact factor: 5.285

Review 6.  How cells get the message: dynamic assembly and function of mRNA-protein complexes.

Authors:  Michaela Müller-McNicoll; Karla M Neugebauer
Journal:  Nat Rev Genet       Date:  2013-03-12       Impact factor: 53.242

7.  Measuring the kinetics of mRNA transcription in single living cells.

Authors:  Yehuda Brody; Yaron Shav-Tal
Journal:  J Vis Exp       Date:  2011-08-25       Impact factor: 1.355

8.  Nuclear domains.

Authors:  D L Spector
Journal:  J Cell Sci       Date:  2001-08       Impact factor: 5.285

9.  Transcriptional pulsing of a developmental gene.

Authors:  Jonathan R Chubb; Tatjana Trcek; Shailesh M Shenoy; Robert H Singer
Journal:  Curr Biol       Date:  2006-05-23       Impact factor: 10.834

10.  The in vivo kinetics of RNA polymerase II elongation during co-transcriptional splicing.

Authors:  Yehuda Brody; Noa Neufeld; Nicole Bieberstein; Sebastien Z Causse; Eva-Maria Böhnlein; Karla M Neugebauer; Xavier Darzacq; Yaron Shav-Tal
Journal:  PLoS Biol       Date:  2011-01-11       Impact factor: 8.029

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  4 in total

1.  In focus in Prague: intermediate filaments.

Authors:  Jürgen Roth; Paul Debbage; Pavel Hozák
Journal:  Histochem Cell Biol       Date:  2013-06-07       Impact factor: 4.304

Review 2.  The Histochem Cell Biol conspectus: the year 2013 in review.

Authors:  Douglas J Taatjes; Jürgen Roth
Journal:  Histochem Cell Biol       Date:  2014-03-09       Impact factor: 4.304

Review 3.  Seeing is believing: visualizing transcriptional dynamics in single cells.

Authors:  Alyshia Newhart; Susan M Janicki
Journal:  J Cell Physiol       Date:  2014-03       Impact factor: 6.384

4.  Exponentially Modified Peak Functions in Biomedical Sciences and Related Disciplines.

Authors:  A Golubev
Journal:  Comput Math Methods Med       Date:  2017-06-05       Impact factor: 2.238

  4 in total

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