Literature DB >> 15899969

Geometric diffusions as a tool for harmonic analysis and structure definition of data: multiscale methods.

R R Coifman1, S Lafon, A B Lee, M Maggioni, B Nadler, F Warner, S W Zucker.   

Abstract

In the companion article, a framework for structural multiscale geometric organization of subsets of R(n) and of graphs was introduced. Here, diffusion semigroups are used to generate multiscale analyses in order to organize and represent complex structures. We emphasize the multiscale nature of these problems and build scaling functions of Markov matrices (describing local transitions) that lead to macroscopic descriptions at different scales. The process of iterating or diffusing the Markov matrix is seen as a generalization of some aspects of the Newtonian paradigm, in which local infinitesimal transitions of a system lead to global macroscopic descriptions by integration. This article deals with the construction of fast-order N algorithms for data representation and for homogenization of heterogeneous structures.

Year:  2005        PMID: 15899969      PMCID: PMC1140426          DOI: 10.1073/pnas.0500896102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  2 in total

1.  Spectral grouping using the Nyström method.

Authors:  Charless Fowlkes; Serge Belongie; Fan Chung; Jitendra Malik
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2004-02       Impact factor: 6.226

2.  Geometric diffusions as a tool for harmonic analysis and structure definition of data: diffusion maps.

Authors:  R R Coifman; S Lafon; A B Lee; M Maggioni; B Nadler; F Warner; S W Zucker
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-17       Impact factor: 12.779

  2 in total
  37 in total

1.  Using sketch-map coordinates to analyze and bias molecular dynamics simulations.

Authors:  Gareth A Tribello; Michele Ceriotti; Michele Parrinello
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-16       Impact factor: 11.205

2.  Defining functional distance using manifold embeddings of gene ontology annotations.

Authors:  Gilad Lerman; Boris E Shakhnovich
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-26       Impact factor: 11.205

3.  Detecting intrinsic slow variables in stochastic dynamical systems by anisotropic diffusion maps.

Authors:  Amit Singer; Radek Erban; Ioannis G Kevrekidis; Ronald R Coifman
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-18       Impact factor: 11.205

4.  From the Cover: Simplifying the representation of complex free-energy landscapes using sketch-map.

Authors:  Michele Ceriotti; Gareth A Tribello; Michele Parrinello
Journal:  Proc Natl Acad Sci U S A       Date:  2011-07-05       Impact factor: 11.205

5.  Functional Territories of Human Dentate Nucleus.

Authors:  Xavier Guell; Anila M D'Mello; Nicholas A Hubbard; Rachel R Romeo; John D E Gabrieli; Susan Whitfield-Gabrieli; Jeremy D Schmahmann; Sheeba Arnold Anteraper
Journal:  Cereb Cortex       Date:  2020-04-14       Impact factor: 5.357

6.  Locally learning biomedical data using diffusion frames.

Authors:  M Ehler; F Filbir; H N Mhaskar
Journal:  J Comput Biol       Date:  2012-10-26       Impact factor: 1.479

7.  Diffusion maps, clustering and fuzzy Markov modeling in peptide folding transitions.

Authors:  Lilia V Nedialkova; Miguel A Amat; Ioannis G Kevrekidis; Gerhard Hummer
Journal:  J Chem Phys       Date:  2014-09-21       Impact factor: 3.488

8.  Two-sample statistics based on anisotropic kernels.

Authors:  Xiuyuan Cheng; Alexander Cloninger; Ronald R Coifman
Journal:  Inf inference       Date:  2019-12-10

9.  Mapping the human DC lineage through the integration of high-dimensional techniques.

Authors:  Peter See; Charles-Antoine Dutertre; Jinmiao Chen; Patrick Günther; Naomi McGovern; Sergio Erdal Irac; Merry Gunawan; Marc Beyer; Kristian Händler; Kaibo Duan; Hermi Rizal Bin Sumatoh; Nicolas Ruffin; Mabel Jouve; Ester Gea-Mallorquí; Raoul C M Hennekam; Tony Lim; Chan Chung Yip; Ming Wen; Benoit Malleret; Ivy Low; Nurhidaya Binte Shadan; Charlene Foong Shu Fen; Alicia Tay; Josephine Lum; Francesca Zolezzi; Anis Larbi; Michael Poidinger; Jerry K Y Chan; Qingfeng Chen; Laurent Rénia; Muzlifah Haniffa; Philippe Benaroch; Andreas Schlitzer; Joachim L Schultze; Evan W Newell; Florent Ginhoux
Journal:  Science       Date:  2017-05-04       Impact factor: 47.728

10.  MicroRNA-integrated and network-embedded gene selection with diffusion distance.

Authors:  Di Huang; Xiaobo Zhou; Christopher J Lyon; Willa A Hsueh; Stephen T C Wong
Journal:  PLoS One       Date:  2010-10-29       Impact factor: 3.240

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