Literature DB >> 15899970

Geometric diffusions as a tool for harmonic analysis and structure definition of data: diffusion maps.

R R Coifman1, S Lafon, A B Lee, M Maggioni, B Nadler, F Warner, S W Zucker.   

Abstract

We provide a framework for structural multiscale geometric organization of graphs and subsets of R(n). We use diffusion semigroups to generate multiscale geometries in order to organize and represent complex structures. We show that appropriately selected eigenfunctions or scaling functions of Markov matrices, which describe local transitions, lead to macroscopic descriptions at different scales. The process of iterating or diffusing the Markov matrix is seen as a generalization of some aspects of the Newtonian paradigm, in which local infinitesimal transitions of a system lead to global macroscopic descriptions by integration. We provide a unified view of ideas from data analysis, machine learning, and numerical analysis.

Entities:  

Year:  2005        PMID: 15899970      PMCID: PMC1140422          DOI: 10.1073/pnas.0500334102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   12.779


  3 in total

1.  Nonlinear dimensionality reduction by locally linear embedding.

Authors:  S T Roweis; L K Saul
Journal:  Science       Date:  2000-12-22       Impact factor: 47.728

2.  Geometric diffusions as a tool for harmonic analysis and structure definition of data: multiscale methods.

Authors:  R R Coifman; S Lafon; A B Lee; M Maggioni; B Nadler; F Warner; S W Zucker
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-17       Impact factor: 11.205

3.  Hessian eigenmaps: locally linear embedding techniques for high-dimensional data.

Authors:  David L Donoho; Carrie Grimes
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-30       Impact factor: 11.205

  3 in total
  204 in total

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Authors:  Dimitrios Giannakis; Andrew J Majda
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-17       Impact factor: 11.205

2.  Comparative analysis of nonlinear dimensionality reduction techniques for breast MRI segmentation.

Authors:  Alireza Akhbardeh; Michael A Jacobs
Journal:  Med Phys       Date:  2012-04       Impact factor: 4.071

3.  A SPECTRAL GRAPH APPROACH TO DISCOVERING GENETIC ANCESTRY.

Authors:  Ann B Lee; Diana Luca; Kathryn Roeder
Journal:  Ann Appl Stat       Date:  2010       Impact factor: 2.083

4.  Systematic determination of order parameters for chain dynamics using diffusion maps.

Authors:  Andrew L Ferguson; Athanassios Z Panagiotopoulos; Pablo G Debenedetti; Ioannis G Kevrekidis
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-19       Impact factor: 11.205

5.  Reference Free Structure Determination through Eigenvectors of Center of Mass Operators.

Authors:  Ronald R Coifman; Yoel Shkolnisky; Fred J Sigworth; Amit Singer
Journal:  Appl Comput Harmon Anal       Date:  2010-05       Impact factor: 3.055

6.  An experimental and computational investigation of spontaneous lasso formation in microcin J25.

Authors:  Andrew L Ferguson; Siyan Zhang; Igor Dikiy; Athanassios Z Panagiotopoulos; Pablo G Debenedetti; A James Link
Journal:  Biophys J       Date:  2010-11-03       Impact factor: 4.033

7.  Identifying Shared Brain Networks in Individuals by Decoupling Functional and Anatomical Variability.

Authors:  Georg Langs; Danhong Wang; Polina Golland; Sophia Mueller; Ruiqi Pan; Mert R Sabuncu; Wei Sun; Kuncheng Li; Hesheng Liu
Journal:  Cereb Cortex       Date:  2015-09-01       Impact factor: 5.357

Review 8.  Machine Learning Force Fields and Coarse-Grained Variables in Molecular Dynamics: Application to Materials and Biological Systems.

Authors:  Paraskevi Gkeka; Gabriel Stoltz; Amir Barati Farimani; Zineb Belkacemi; Michele Ceriotti; John D Chodera; Aaron R Dinner; Andrew L Ferguson; Jean-Bernard Maillet; Hervé Minoux; Christine Peter; Fabio Pietrucci; Ana Silveira; Alexandre Tkatchenko; Zofia Trstanova; Rafal Wiewiora; Tony Lelièvre
Journal:  J Chem Theory Comput       Date:  2020-07-16       Impact factor: 6.006

9.  Geometric diffusions as a tool for harmonic analysis and structure definition of data: multiscale methods.

Authors:  R R Coifman; S Lafon; A B Lee; M Maggioni; B Nadler; F Warner; S W Zucker
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-17       Impact factor: 11.205

10.  Modelling acute myeloid leukaemia in a continuum of differentiation states.

Authors:  H Cho; K Ayers; L DePills; Y-H Kuo; J Park; A Radunskaya; R Rockne
Journal:  Lett Biomath       Date:  2018-06-18
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