Literature DB >> 15870212

Ab initio quantum chemistry: methodology and applications.

Richard A Friesner1.   

Abstract

This Perspective provides an overview of state-of-the-art ab initio quantum chemical methodology and applications. The methods that are discussed include coupled cluster theory, localized second-order Moller-Plesset perturbation theory, multireference perturbation approaches, and density functional theory. The accuracy of each approach for key chemical properties is summarized, and the computational performance is analyzed, emphasizing significant advances in algorithms and implementation over the past decade. Incorporation of a condensed-phase environment by means of mixed quantum mechanical/molecular mechanics or self-consistent reaction field techniques, is presented. A wide range of illustrative applications, focusing on materials science and biology, are discussed briefly.

Mesh:

Year:  2005        PMID: 15870212      PMCID: PMC1100737          DOI: 10.1073/pnas.0408036102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  28 in total

1.  A comparative study of galactose oxidase and active site analogs based on QM/MM Car-Parrinello simulations.

Authors:  U Rothlisberger; P Carloni; K Doclo; M Parrinello
Journal:  J Biol Inorg Chem       Date:  2000-04       Impact factor: 3.358

2.  Electrostatic stress in catalysis: structure and mechanism of the enzyme orotidine monophosphate decarboxylase.

Authors:  N Wu; Y Mo; J Gao; E F Pai
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-29       Impact factor: 11.205

3.  Beta-sheet preferences from first principles.

Authors:  Jan Rossmeisl; Iben Kristensen; Misha Gregersen; Karsten W Jacobsen; Jens K Nørskov
Journal:  J Am Chem Soc       Date:  2003-12-31       Impact factor: 15.419

4.  H-bonding cooperativity and energetics of alpha-helix formation of five 17-amino acid peptides.

Authors:  Robert Wieczorek; J J Dannenberg
Journal:  J Am Chem Soc       Date:  2003-07-09       Impact factor: 15.419

5.  Development and testing of a general amber force field.

Authors:  Junmei Wang; Romain M Wolf; James W Caldwell; Peter A Kollman; David A Case
Journal:  J Comput Chem       Date:  2004-07-15       Impact factor: 3.376

6.  Cytochrome P450CAM enzymatic catalysis cycle: a quantum mechanics/molecular mechanics study.

Authors:  Victor Guallar; Richard A Friesner
Journal:  J Am Chem Soc       Date:  2004-07-14       Impact factor: 15.419

7.  Quantum confinement in phosphorus-doped silicon nanocrystals.

Authors:  Dmitriy V Melnikov; James R Chelikowsky
Journal:  Phys Rev Lett       Date:  2004-01-28       Impact factor: 9.161

8.  Unified approach for molecular dynamics and density-functional theory.

Authors: 
Journal:  Phys Rev Lett       Date:  1985-11-25       Impact factor: 9.161

9.  Electronic properties of oxidized carbon nanotubes

Authors: 
Journal:  Phys Rev Lett       Date:  2000-08-21       Impact factor: 9.161

10.  Mixed quantum mechanical/molecular mechanical (QM/MM) study of the deacylation reaction in a penicillin binding protein (PBP) versus in a class C beta-lactamase.

Authors:  Benjamin F Gherman; Shalom D Goldberg; Virginia W Cornish; Richard A Friesner
Journal:  J Am Chem Soc       Date:  2004-06-23       Impact factor: 15.419

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  37 in total

1.  Experimental and theoretical investigation of the proton-bound dimer of lysine.

Authors:  Ronghu Wu; Richard A Marta; Jonathan K Martens; Kris R Eldridge; Terry B McMahon
Journal:  J Am Soc Mass Spectrom       Date:  2011-06-22       Impact factor: 3.109

2.  Theoretical studies on bimolecular reaction dynamics.

Authors:  David C Clary
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-14       Impact factor: 11.205

3.  Sulfation and cation effects on the conformational properties of the glycan backbone of chondroitin sulfate disaccharides.

Authors:  Christina E Faller; Olgun Guvench
Journal:  J Phys Chem B       Date:  2015-05-07       Impact factor: 2.991

4.  Computational approaches to shed light on molecular mechanisms in biological processes.

Authors:  Giorgio Moro; Laura Bonati; Maurizio Bruschi; Ugo Cosentino; Luca De Gioia; Pier Carlo Fantucci; Alessandro Pandini; Elena Papaleo; Demetrio Pitea; Gloria A A Saracino; Giuseppe Zampella
Journal:  Theor Chem Acc       Date:  2007-05-01       Impact factor: 1.702

Review 5.  Biomolecular electrostatics and solvation: a computational perspective.

Authors:  Pengyu Ren; Jaehun Chun; Dennis G Thomas; Michael J Schnieders; Marcelo Marucho; Jiajing Zhang; Nathan A Baker
Journal:  Q Rev Biophys       Date:  2012-11       Impact factor: 5.318

Review 6.  Molecular mechanisms for generating transmembrane proton gradients.

Authors:  M R Gunner; Muhamed Amin; Xuyu Zhu; Jianxun Lu
Journal:  Biochim Biophys Acta       Date:  2013-03-16

7.  Screening of different computational models for the preparation of sol-gel imprinted materials.

Authors:  Elmer-Rico E Mojica
Journal:  J Mol Model       Date:  2013-07-06       Impact factor: 1.810

8.  X-ray crystal and computational structural study of (E)-2-[(2-chloro-phenyl)-iminometh-yl]-4-methoxy-phenol.

Authors:  Arzu Ozek; Orhan Büyükgüngör; Ciğdem Albayrak; Mustafa Odabaşoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-23

9.  X-ray and computational structural study of (E)-2-(4-chloro-phenyl-imino-meth-yl)-4-methoxy-phenol.

Authors:  Arzu Ozek; Orhan Büyükgüngör; Ciğdem Albayrak; Mustafa Odabaşoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-31

10.  TCNE-modified graphene as an adsorbent for N2O molecule: a DFT study.

Authors:  Somayeh F Rastegar; Noushin Osouleddini
Journal:  J Mol Model       Date:  2017-11-22       Impact factor: 1.810

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