Literature DB >> 21203278

X-ray crystal and computational structural study of (E)-2-[(2-chloro-phenyl)-iminometh-yl]-4-methoxy-phenol.

Arzu Ozek, Orhan Büyükgüngör, Ciğdem Albayrak, Mustafa Odabaşoğlu.   

Abstract

In the mol-ecule of the title compound, C(14)H(12)ClNO, the two aromatic rings are oriented at a dihedral angle of 12.28 (7)°. An intra-molecular O-H⋯N hydrogen bond results in the formation of a nearly planar six-membered ring, which is oriented with respect to the aromatic rings at dihedral angles of 0.18 (5) and 12.10 (6)°. In the crystal structure, weak inter-molecular C-H⋯O hydrogen bonds link the mol-ecules into chains along the c axis. There is a C-H⋯π contact between the methyl group and the chloro-phenyl ring and a π-π contact between the two benzene rings [centroid-centroid distance = 3.866 (1) Å].

Entities:  

Year:  2008        PMID: 21203278      PMCID: PMC2962062          DOI: 10.1107/S1600536808021958

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Özek et al. (2007 ▶); Odabaşoğlu, Büyükgüngör et al. (2007 ▶); Odabaşoğlu, Arslan et al. (2007 ▶); Albayrak et al. (2005 ▶); Elerman et al. (1995 ▶); Frisch et al. (2004 ▶). For general background, see: Friesner (2005 ▶); Liu et al. (2004 ▶).

Experimental

Crystal data

C14H12ClNO2 M = 261.70 Monoclinic, a = 13.2348 (9) Å b = 8.4701 (4) Å c = 12.0115 (8) Å β = 112.846 (5)° V = 1240.86 (13) Å3 Z = 4 Mo Kα radiation μ = 0.30 mm−1 T = 296 K 0.56 × 0.40 × 0.11 mm

Data collection

Stoe IPDSII diffractometer Absorption correction: integration (X-RED32; Stoe & Cie, 2002 ▶) T min = 0.851, T max = 0.966 15517 measured reflections 2441 independent reflections 1977 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.089 S = 1.05 2441 reflections 167 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.13 e Å−3 Δρmin = −0.21 e Å−3 Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808021958/hk2494sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808021958/hk2494Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H12ClNO2F000 = 544
Mr = 261.70Dx = 1.401 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 15517 reflections
a = 13.2348 (9) Åθ = 2.0–28.0º
b = 8.4701 (4) ŵ = 0.30 mm1
c = 12.0115 (8) ÅT = 296 K
β = 112.846 (5)ºPrismatic plate, red
V = 1240.86 (13) Å30.56 × 0.40 × 0.11 mm
Z = 4
Stoe IPDSII diffractometer2441 independent reflections
Radiation source: fine-focus sealed tube1977 reflections with I > 2σ(I)
Monochromator: plane graphiteRint = 0.042
Detector resolution: 6.67 pixels mm-1θmax = 26.0º
T = 296 Kθmin = 2.9º
ω scansh = −16→16
Absorption correction: integration(X-RED32; Stoe & Cie, 2002)k = −10→10
Tmin = 0.851, Tmax = 0.966l = −14→14
15517 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.031H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.089  w = 1/[σ2(Fo2) + (0.0523P)2 + 0.0594P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.001
2441 reflectionsΔρmax = 0.13 e Å3
167 parametersΔρmin = −0.21 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Experimental. 336 frames, detector distance = 80 mm
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.11627 (3)0.76700 (5)0.55086 (4)0.06604 (15)
O10.40106 (9)0.86945 (14)0.69518 (11)0.0623 (3)
H10.3554 (17)0.822 (2)0.641 (2)0.082 (6)*
O20.77703 (8)0.90497 (15)0.60329 (11)0.0728 (3)
N10.31117 (9)0.70603 (13)0.49903 (10)0.0454 (3)
C10.49336 (10)0.80152 (15)0.56335 (12)0.0445 (3)
C20.49138 (11)0.87192 (16)0.66786 (13)0.0494 (3)
C30.58388 (13)0.95011 (19)0.74523 (14)0.0599 (4)
H30.58310.99780.81460.072*
C40.67628 (12)0.95805 (19)0.72077 (14)0.0619 (4)
H40.73771.01090.77390.074*
C50.67990 (11)0.88837 (17)0.61772 (14)0.0547 (3)
C60.58916 (11)0.81123 (16)0.53942 (13)0.0501 (3)
H60.59090.76500.47000.060*
C70.78611 (14)0.8339 (2)0.50131 (18)0.0726 (5)
H7A0.73130.87680.42910.087*
H7B0.77560.72200.50370.087*
H7C0.85760.85440.50180.087*
C80.39782 (11)0.72290 (15)0.47745 (12)0.0457 (3)
H80.39950.68420.40570.055*
C90.21762 (10)0.62666 (15)0.41915 (12)0.0443 (3)
C100.12031 (11)0.64486 (15)0.43678 (13)0.0479 (3)
C110.02522 (11)0.56821 (18)0.36454 (15)0.0595 (4)
H11−0.03910.58280.37730.071*
C120.02614 (12)0.47049 (19)0.27390 (15)0.0637 (4)
H12−0.03760.41880.22490.076*
C130.12142 (13)0.4492 (2)0.25577 (14)0.0629 (4)
H130.12200.38190.19480.075*
C140.21635 (12)0.52647 (17)0.32687 (13)0.0548 (3)
H140.28010.51140.31300.066*
U11U22U33U12U13U23
C10.0411 (7)0.0489 (7)0.0414 (7)−0.0018 (5)0.0136 (5)0.0020 (5)
C20.0508 (7)0.0523 (7)0.0453 (7)−0.0019 (6)0.0190 (6)0.0008 (6)
C30.0626 (9)0.0646 (9)0.0469 (8)−0.0067 (7)0.0153 (7)−0.0092 (7)
C40.0500 (8)0.0653 (9)0.0580 (9)−0.0116 (7)0.0075 (7)−0.0067 (7)
C50.0406 (7)0.0569 (8)0.0624 (9)−0.0023 (6)0.0154 (6)0.0041 (7)
C60.0452 (7)0.0553 (7)0.0495 (8)−0.0023 (6)0.0180 (6)−0.0003 (6)
C70.0531 (9)0.0848 (11)0.0877 (12)−0.0008 (8)0.0358 (9)0.0109 (10)
C80.0453 (7)0.0523 (7)0.0395 (7)−0.0034 (5)0.0164 (5)0.0004 (5)
C90.0422 (7)0.0460 (6)0.0422 (7)−0.0028 (5)0.0135 (5)0.0062 (5)
C100.0451 (7)0.0468 (7)0.0511 (8)−0.0005 (5)0.0179 (6)0.0037 (6)
C110.0410 (7)0.0591 (8)0.0747 (10)−0.0029 (6)0.0184 (7)0.0021 (7)
C120.0500 (8)0.0664 (9)0.0622 (10)−0.0138 (7)0.0082 (7)−0.0034 (7)
C130.0663 (10)0.0682 (9)0.0526 (9)−0.0154 (7)0.0214 (7)−0.0101 (7)
C140.0533 (8)0.0621 (8)0.0525 (8)−0.0088 (6)0.0246 (6)−0.0040 (7)
N10.0406 (6)0.0517 (6)0.0430 (6)−0.0029 (4)0.0153 (5)0.0017 (5)
O10.0597 (7)0.0781 (7)0.0560 (6)−0.0107 (5)0.0301 (5)−0.0142 (6)
O20.0437 (6)0.0865 (8)0.0880 (9)−0.0134 (5)0.0255 (6)−0.0087 (7)
Cl10.0595 (2)0.0677 (2)0.0810 (3)−0.00680 (17)0.0382 (2)−0.01591 (19)
O1—H10.80 (2)C7—H7C0.9600
C1—C21.3992 (19)C8—N11.2781 (17)
C1—C61.4071 (18)C8—H80.9300
C1—C81.4470 (19)C9—C141.3908 (19)
C2—O11.3572 (17)C9—C101.3925 (18)
C2—C31.385 (2)C9—N11.4082 (17)
C3—C41.366 (2)C10—C111.3822 (19)
C3—H30.9300C10—Cl11.7342 (14)
C4—C51.389 (2)C11—C121.371 (2)
C4—H40.9300C11—H110.9300
C5—O21.3694 (17)C12—C131.372 (2)
C5—C61.370 (2)C12—H120.9300
C6—H60.9300C13—C141.379 (2)
C7—O21.411 (2)C13—H130.9300
C7—H7A0.9600C14—H140.9300
C7—H7B0.9600
C2—O1—H1105.4 (15)O2—C7—H7C109.5
C5—O2—C7117.81 (12)H7A—C7—H7C109.5
C8—N1—C9122.41 (12)H7B—C7—H7C109.5
C2—C1—C6119.38 (12)N1—C8—C1120.75 (13)
C2—C1—C8121.36 (12)N1—C8—H8119.6
C6—C1—C8119.24 (13)C1—C8—H8119.6
O1—C2—C3118.51 (13)C14—C9—C10117.58 (12)
O1—C2—C1122.37 (12)C14—C9—N1124.73 (12)
C3—C2—C1119.10 (13)C10—C9—N1117.64 (12)
C4—C3—C2120.75 (14)C11—C10—C9121.54 (13)
C4—C3—H3119.6C11—C10—Cl1118.44 (11)
C2—C3—H3119.6C9—C10—Cl1120.02 (10)
C3—C4—C5120.96 (13)C12—C11—C10119.69 (14)
C3—C4—H4119.5C12—C11—H11120.2
C5—C4—H4119.5C10—C11—H11120.2
O2—C5—C6125.30 (15)C11—C12—C13119.81 (13)
O2—C5—C4115.35 (13)C11—C12—H12120.1
C6—C5—C4119.35 (13)C13—C12—H12120.1
C5—C6—C1120.45 (14)C12—C13—C14120.77 (15)
C5—C6—H6119.8C12—C13—H13119.6
C1—C6—H6119.8C14—C13—H13119.6
O2—C7—H7A109.5C13—C14—C9120.61 (14)
O2—C7—H7B109.5C13—C14—H14119.7
H7A—C7—H7B109.5C9—C14—H14119.7
C6—C1—C2—O1178.75 (13)C4—C5—C6—C1−0.4 (2)
C8—C1—C2—O10.6 (2)C1—C8—N1—C9−178.32 (11)
C6—C1—C2—C30.2 (2)C14—C9—N1—C816.7 (2)
C8—C1—C2—C3−177.93 (13)C10—C9—N1—C8−165.93 (12)
C2—C1—C6—C50.2 (2)C14—C9—C10—C11−0.9 (2)
C8—C1—C6—C5178.38 (13)N1—C9—C10—C11−178.38 (12)
C2—C1—C8—N1−4.9 (2)C14—C9—C10—Cl1179.58 (10)
C6—C1—C8—N1176.91 (12)N1—C9—C10—Cl12.05 (16)
O1—C2—C3—C4−178.98 (14)C10—C9—C14—C130.3 (2)
C1—C2—C3—C4−0.4 (2)N1—C9—C14—C13177.61 (13)
C2—C3—C4—C50.1 (2)C9—C10—C11—C120.6 (2)
C3—C4—C5—O2179.83 (15)Cl1—C10—C11—C12−179.78 (12)
C3—C4—C5—C60.3 (2)C10—C11—C12—C130.2 (2)
C6—C5—O2—C7−1.7 (2)C11—C12—C13—C14−0.7 (2)
C4—C5—O2—C7178.80 (14)C12—C13—C14—C90.5 (2)
O2—C5—C6—C1−179.95 (13)
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.80 (2)1.85 (2)2.5896 (16)152 (2)
C8—H8···O1i0.932.583.4960 (19)169
C7—H7b···Cg2ii0.962.903.682139.00
ParametersX-rayAM1PM3HFaDFT/B3LYPa
C8—N11.278 (17)1.2921.3021.2621.294
C2—O11357 (17)1.3661.3551.3321.341
C1—C61.407 (18)1.4121.4061.4081.416
C1—C81.447 (19)1.4651.4781.4631.446
C1—C21.399 (19)1.4041.4081.3921.418
N1—C91.408 (17)1.4081.4271.4021.399
C9—C101.392 (18)1.4171.4021.3931.409
C10—Cl11.734 (14)1.6991.6801.7411.755
C5—-O21.369 (17)1.3851.3851.3541.369
C9—C10—Cl1120.02 (10)120.869120.554120.163119.783
C6—C5—O2125.3 (15)124.874125.684125.547125.410
C6—C1—C8119.24 (13)116.155117.987117.891119.224
C9—N1—C8122.41 (12)121.909122.720120.140121.089
C14—C9—N1124.73 (12)123.114123.424122.078122.787
N1—C8—C1120.75 (13)123.585119.187123.458122.291
N1—C9—C10117.64 (12)118.844116.913119.874119.562
C8—C1—C2—O10.6 (2)-0.0340.012-0.194-0.175
C6—C5—O2—C7-1.7 (2)0.543-0.4850.5680.096
C10—C9—N1—C8-165.93 (12)-147.255-179.982-134.578-144.790
N1—C8—C1—C6176.91 (12)176.946-179.997179.409179.781
C1—C8—N1—C9-178.32 (11)-179.082179.999-178.064-176.682
Table 1

Hydrogen-bond geometry (Å, °)

Cg2 is the centroid of the C9–C14 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N10.80 (2)1.85 (2)2.5896 (16)152 (2)
C8—H8⋯O1i0.932.583.4960 (19)169
C7—H7b⋯Cg2ii0.962.903.682139

Symmetry codes: (i) ; (ii) .

Table 2

Selected geometric parameters (Å, °) calculated with X-ray, AM1, PM3, HF and DFT

ParametersX-rayAM1PM3HFaDFT/B3LYPa
C8—N11.278 (17)1.2921.3021.2621.294
C2—O11.357 (17)1.3661.3551.3321.341
C1—C61.407 (18)1.4121.4061.4081.416
C1—C81.447 (19)1.4651.4781.4631.446
C1—C21.399 (19)1.4041.4081.3921.418
N1—C91.408 (17)1.4081.4271.4021.399
C9—C101.392 (18)1.4171.4021.3931.409
C10—Cl11.734 (14)1.6991.6801.7411.755
C5—O21.369 (17)1.3851.3851.3541.369
      
C9—C10—Cl1120.02 (10)120.869120.554120.163119.783
C6—C5—O2125.3 (15)124.874125.684125.547125.410
C6—C1—C8119.24 (13)116.155117.987117.891119.224
C9—N1—C8122.41 (12)121.909122.720120.140121.089
C14—C9—N1124.73 (12)123.114123.424122.078122.787
N1—C8—C1120.75 (13)123.585119.187123.458122.291
N1—C9—C10117.64 (12)118.844116.913119.874119.562
      
C8—C1—C2—O10.6 (2)−0.0340.012−0.194−0.175
C6—C5—O2—C7−1.7 (2)0.543−0.4850.5680.096
C10—C9—N1—C8−165.93 (12)−147.255−179.982−134.578−144.790
N1—C8—C1—C6176.91 (12)176.946−179.997179.409179.781
C1—C8—N1—C9−178.32 (11)−179.082179.999−178.064−176.682

Note: (a) 6-31G(d,p).

  3 in total

1.  Ab initio quantum chemistry: methodology and applications.

Authors:  Richard A Friesner
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-03       Impact factor: 11.205

2.  Three (E)-2-[(bromophenyl)iminomethyl]-4-methoxyphenols.

Authors:  Arzu Ozek; Ciğdem Albayrak; Mustafa Odabaşoğlu; Orhan Büyükgüngör
Journal:  Acta Crystallogr C       Date:  2007-02-17       Impact factor: 1.172

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  3 in total
  2 in total

1.  (E)-2-[(4-Ethoxy-phen-yl)imino-meth-yl]-4-methoxy-phenol.

Authors:  Arzu Ozek; Ciğdem Albayrak; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-10

2.  4,4'-Dimeth-oxy-2,2'-{[(3aRS,7aRS)-2,3,3a,4,5,6,7,7a-octa-hydro-1H-1,3-benzimidazole-1,3-diyl]bis(methyl-ene)}diphenol.

Authors:  Augusto Rivera; Diego Quiroga; Jaime Ríos-Motta; Karla Fejfarová; Michal Dušek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-11
  2 in total

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