Literature DB >> 21203306

X-ray and computational structural study of (E)-2-(4-chloro-phenyl-imino-meth-yl)-4-methoxy-phenol.

Arzu Ozek, Orhan Büyükgüngör, Ciğdem Albayrak, Mustafa Odabaşoğlu.   

Abstract

In the mol-ecule of the title compound, C(14)H(12)ClNO(2), the two aromatic rings are oriented at a dihedral angle of 5.92 (7)°. An intra-molecular O-H⋯N hydrogen bond results in the formation of a nearly planar six-membered ring, which is oriented at dihedral angles of 1.55 (4) and 5.95 (4)° with respect to the phenol and chlorophenyl rings, respectively. In the crystal structure, weak inter-molecular C-H⋯O hydrogen bonds link the mol-ecules into a three-dimensional network.

Entities:  

Year:  2008        PMID: 21203306      PMCID: PMC2962225          DOI: 10.1107/S1600536808023416

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Özek et al. (2007 ▶); Odabaşoğlu, Büyükgüngör et al. (2007 ▶); Odabaşoğlu, Arslan et al. (2007 ▶); Albayrak et al. (2005 ▶); Elerman et al. (1995 ▶). For general background, see: Friesner (2005 ▶); Liu et al. (2004 ▶).

Experimental

Crystal data

C14H12ClNO2 M = 261.70 Monoclinic, a = 21.2642 (19) Å b = 4.7101 (3) Å c = 12.2175 (12) Å β = 93.361 (8)° V = 1221.56 (18) Å3 Z = 4 Mo Kα radiation μ = 0.30 mm−1 T = 296 K 0.68 × 0.44 × 0.21 mm

Data collection

Stoe IPDSII diffractometer Absorption correction: integration (X-RED32; Stoe & Cie, 2002 ▶) T min = 0.825, T max = 0.925 10205 measured reflections 2364 independent reflections 1789 reflections with I > 2σ(I) R int = 0.080

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.099 S = 1.00 2364 reflections 167 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.20 e Å−3 Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and GAUSSIAN (Frisch et al., 2004 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808023416/hk2503sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808023416/hk2503Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H12ClNO2F000 = 544
Mr = 261.70Dx = 1.423 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 10205 reflections
a = 21.2642 (19) Åθ = 1.7–27.2º
b = 4.7101 (3) ŵ = 0.31 mm1
c = 12.2175 (12) ÅT = 296 K
β = 93.361 (8)ºPrismatic long stick, red
V = 1221.56 (18) Å30.68 × 0.44 × 0.21 mm
Z = 4
Stoe IPDSII diffractometer2364 independent reflections
Radiation source: fine-focus sealed tube1789 reflections with I > 2σ(I)
Monochromator: plane graphiteRint = 0.080
Detector resolution: 6.67 pixels mm-1θmax = 26.0º
T = 296 Kθmin = 1.9º
ω scansh = −26→26
Absorption correction: integration(X-RED32; Stoe & Cie, 2002)k = −5→5
Tmin = 0.825, Tmax = 0.925l = −14→14
10205 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.037H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.099  w = 1/[σ2(Fo2) + (0.0641P)2] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max < 0.001
2364 reflectionsΔρmax = 0.20 e Å3
167 parametersΔρmin = −0.20 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Experimental. 225 frames, detector distance = 120 mm
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.03208 (2)1.40379 (9)0.66121 (4)0.06631 (18)
O10.26185 (6)0.2746 (3)0.35438 (10)0.0677 (4)
H10.2404 (12)0.393 (5)0.394 (2)0.112 (9)*
O20.42346 (6)−0.2199 (3)0.66813 (10)0.0676 (4)
N10.21631 (6)0.5615 (3)0.51562 (10)0.0455 (3)
C10.29911 (7)0.2216 (3)0.54240 (12)0.0428 (3)
C20.30182 (7)0.1541 (3)0.43144 (12)0.0480 (4)
C30.34597 (8)−0.0395 (4)0.39932 (13)0.0575 (4)
H30.3478−0.08410.32540.069*
C40.38738 (8)−0.1674 (4)0.47512 (14)0.0551 (4)
H40.4170−0.29640.45210.066*
C50.38493 (7)−0.1042 (3)0.58541 (13)0.0493 (4)
C60.34078 (7)0.0873 (3)0.61831 (13)0.0484 (3)
H60.33870.12780.69250.058*
C70.47390 (9)−0.3918 (4)0.63688 (19)0.0753 (6)
H7A0.5012−0.28190.59360.090*
H7B0.4576−0.54990.59450.090*
H7C0.4971−0.46040.70130.090*
C80.25442 (7)0.4252 (3)0.58089 (12)0.0461 (3)
H80.25340.45790.65580.055*
C90.17376 (7)0.7637 (3)0.55533 (12)0.0436 (3)
C100.12943 (7)0.8772 (3)0.48017 (13)0.0522 (4)
H100.12910.81990.40730.063*
C110.08576 (8)1.0737 (3)0.51122 (14)0.0550 (4)
H110.05611.14740.45990.066*
C120.08649 (7)1.1592 (3)0.61875 (14)0.0496 (4)
C130.13070 (8)1.0524 (4)0.69489 (14)0.0557 (4)
H130.13121.11290.76740.067*
C140.17395 (7)0.8564 (3)0.66347 (13)0.0531 (4)
H140.20370.78480.71510.064*
U11U22U33U12U13U23
Cl10.0617 (3)0.0529 (2)0.0864 (3)0.01245 (18)0.0222 (2)0.0027 (2)
O10.0789 (8)0.0846 (9)0.0392 (6)0.0278 (7)−0.0008 (6)−0.0003 (6)
O20.0658 (7)0.0785 (8)0.0577 (7)0.0260 (6)−0.0028 (6)0.0012 (6)
N10.0478 (7)0.0442 (6)0.0448 (7)0.0018 (5)0.0049 (5)−0.0012 (5)
C10.0448 (7)0.0422 (7)0.0418 (8)−0.0002 (6)0.0068 (6)−0.0005 (6)
C20.0521 (8)0.0535 (9)0.0387 (8)0.0048 (6)0.0045 (7)0.0015 (6)
C30.0654 (10)0.0667 (10)0.0414 (8)0.0101 (8)0.0104 (7)−0.0051 (7)
C40.0548 (9)0.0571 (9)0.0545 (10)0.0100 (7)0.0114 (8)−0.0039 (7)
C50.0484 (8)0.0499 (8)0.0495 (8)0.0037 (6)0.0014 (7)0.0014 (7)
C60.0531 (8)0.0507 (8)0.0414 (8)0.0036 (7)0.0031 (7)−0.0039 (7)
C70.0683 (11)0.0716 (12)0.0849 (14)0.0251 (10)−0.0049 (10)0.0002 (10)
C80.0505 (8)0.0467 (8)0.0415 (8)0.0019 (6)0.0060 (7)−0.0027 (6)
C90.0439 (7)0.0406 (7)0.0468 (8)−0.0016 (6)0.0061 (6)−0.0005 (6)
C100.0572 (9)0.0534 (9)0.0458 (9)0.0035 (7)0.0021 (7)−0.0005 (7)
C110.0535 (9)0.0532 (9)0.0579 (10)0.0075 (7)−0.0002 (7)0.0058 (7)
C120.0464 (8)0.0404 (7)0.0632 (10)−0.0002 (6)0.0133 (7)0.0026 (7)
C130.0614 (9)0.0561 (9)0.0500 (9)0.0054 (7)0.0074 (8)−0.0058 (7)
C140.0548 (9)0.0558 (9)0.0482 (9)0.0106 (7)−0.0002 (7)−0.0019 (7)
O1—H10.88 (3)C7—H7C0.9600
C1—C61.396 (2)C8—N11.2763 (19)
C1—C21.397 (2)C8—H80.9300
C1—C81.448 (2)C9—C101.384 (2)
C2—O11.3554 (18)C9—C141.391 (2)
C2—C31.382 (2)C9—N11.4186 (19)
C3—C41.379 (2)C10—C111.380 (2)
C3—H30.9300C10—H100.9300
C4—C51.384 (2)C11—C121.373 (2)
C4—H40.9300C11—H110.9300
C5—O21.3756 (18)C12—C131.378 (2)
C5—C61.379 (2)C12—Cl11.7337 (15)
C6—H60.9300C13—C141.374 (2)
C7—O21.414 (2)C13—H130.9300
C7—H7A0.9600C14—H140.9300
C7—H7B0.9600
C2—O1—H1102.0 (17)O2—C7—H7C109.5
C5—O2—C7117.19 (14)H7A—C7—H7C109.5
C8—N1—C9121.22 (13)H7B—C7—H7C109.5
C6—C1—C2118.74 (14)N1—C8—C1122.35 (14)
C6—C1—C8119.18 (13)N1—C8—H8118.8
C2—C1—C8122.08 (13)C1—C8—H8118.8
O1—C2—C3119.19 (14)C10—C9—C14118.22 (14)
O1—C2—C1121.27 (14)C10—C9—N1117.10 (13)
C3—C2—C1119.54 (14)C14—C9—N1124.68 (13)
C4—C3—C2121.03 (15)C11—C10—C9121.32 (15)
C4—C3—H3119.5C11—C10—H10119.3
C2—C3—H3119.5C9—C10—H10119.3
C3—C4—C5120.05 (15)C12—C11—C10119.31 (14)
C3—C4—H4120.0C12—C11—H11120.3
C5—C4—H4120.0C10—C11—H11120.3
O2—C5—C6115.56 (14)C11—C12—C13120.51 (15)
O2—C5—C4125.11 (15)C11—C12—Cl1120.72 (12)
C6—C5—C4119.33 (14)C13—C12—Cl1118.77 (13)
C5—C6—C1121.29 (14)C14—C13—C12119.87 (15)
C5—C6—H6119.4C14—C13—H13120.1
C1—C6—H6119.4C12—C13—H13120.1
O2—C7—H7A109.5C13—C14—C9120.76 (14)
O2—C7—H7B109.5C13—C14—H14119.6
H7A—C7—H7B109.5C9—C14—H14119.6
C6—C1—C2—O1178.95 (14)C14—C9—C10—C11−1.0 (2)
C8—C1—C2—O1−0.9 (2)N1—C9—C10—C11179.50 (14)
C6—C1—C2—C3−0.9 (2)C9—C10—C11—C120.3 (2)
C8—C1—C2—C3179.23 (14)C10—C11—C12—C130.6 (2)
O1—C2—C3—C4−179.82 (16)C10—C11—C12—Cl1−179.55 (12)
C1—C2—C3—C40.1 (3)C11—C12—C13—C14−0.8 (2)
C2—C3—C4—C50.4 (3)Cl1—C12—C13—C14179.40 (12)
C3—C4—C5—O2179.54 (16)C12—C13—C14—C90.0 (2)
C3—C4—C5—C60.0 (2)C10—C9—C14—C130.9 (2)
O2—C5—C6—C1179.51 (14)N1—C9—C14—C13−179.70 (14)
C4—C5—C6—C1−0.9 (2)C1—C8—N1—C9−178.85 (13)
C2—C1—C6—C51.4 (2)C10—C9—N1—C8−172.84 (13)
C8—C1—C6—C5−178.79 (14)C14—C9—N1—C87.7 (2)
C6—C1—C8—N1177.90 (14)C6—C5—O2—C7−172.96 (15)
C2—C1—C8—N1−2.3 (2)C4—C5—O2—C77.5 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.88 (3)1.79 (3)2.6210 (18)157 (2)
C7—H7C···O2i0.962.563.495 (2)164
ParametersX-RAYAM1PM3HFaDFT/B3LYPa
C8 N11.276 (19)1.2921.3021.2621.293
C2 O11.355418)1.3681.3571.3361.344
C1 C61.396 (2)1.4061.4011.3931.406
C1 C81.448 (2)1.4661.4591.4671.449
C1 C21.397 (2)1.4081.4111.4021.423
N1 C91.418 (19)1.4091.4311.4081.406
C9 C101.384 (2)1.4141.4011.3911.403
C12 Cl11.734 (15)1.6991.6841.7431.758
C5 O21.3756 (18)1.3851.3861.3551.371
C11 C12 Cl1120.72 (12)119.860119.505119.595119.538
C6 C5 O2115.56 (14)114.847113.926116.374116.232
C6 C1 C8119.18 (13)116.153118.078118.004119.327
C9 N1 C8121.22 (13)121.780122.176120.342121.253
C14 C9 N1124.68 (13)123.445122.813122.881123.392
N1 C8 C1122.35 (14)123.800119.635123.408122.250
N1 C9 C10117.10 (13)117.991116.829118.015117.770
C8 C1 C2 O1-0.9 (2)-0.050-0.030-0.111-0.085
C6 C5 O2 C7-172.96 (15)179.476179.983179.698-179.874
C10 C9 N1 C8-172.84 (13)-149.450179.99962.793-147.450
N1 C8 C1 C6177.90 (14)-177.484-0.066-179.307-179.448
C1 C8 N1 C9-178.85 (13)-179.157179.991-178.540-177.303
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N10.88 (3)1.79 (3)2.6210 (18)157 (2)
C7—H7C⋯O2i0.962.563.495 (2)164

Symmetry code: (i) .

Table 2

Selected geometric parameters (Å, °) calculated with X-RAY, AM1, PM3, HF and DFT

ParametersX-RAYAM1PM3HFaDFT/B3LYPa
C8—N11.276 (19)1.2921.3021.2621.293
C2—O11.355418)1.3681.3571.3361.344
C1—C61.396 (2)1.4061.4011.3931.406
C1—C81.448 (2)1.4661.4591.4671.449
C1—C21.397 (2)1.4081.4111.4021.423
N1—C91.418 (19)1.4091.4311.4081.406
C9—C101.384 (2)1.4141.4011.3911.403
C12—Cl11.734 (15)1.6991.6841.7431.758
C5—O21.3756 (18)1.3851.3861.3551.371
C11—C12—Cl1120.72 (12)119.860119.505119.595119.538
C6—C5—O2115.56 (14)114.847113.926116.374116.232
C6—C1—C8119.18 (13)116.153118.078118.004119.327
C9—N1 —C8121.22 (13)121.780122.176120.342121.253
C14—C9—N1124.68 (13)123.445122.813122.881123.392
N1—C8—C1122.35 (14)123.800119.635123.408122.250
N1—C9—C10117.10 (13)117.991116.829118.015117.770
C8—C1—C2—O1−0.9 (2)−0.050−0.030−0.111−0.085
C6—C5—O2—C7−172.96 (15)179.476179.983179.698−179.874
C10—C9—N1—C8−172.84 (13)−149.450179.99962.793−147.450
N1—C8—C1—C6177.90 (14)−177.484−0.066−179.307−179.448
C1—C8—N1—C9−178.85 (13)−179.157179.991−178.540−177.303

Notes: (a) 6-31G(d,p).

  3 in total

1.  Ab initio quantum chemistry: methodology and applications.

Authors:  Richard A Friesner
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-03       Impact factor: 11.205

2.  Three (E)-2-[(bromophenyl)iminomethyl]-4-methoxyphenols.

Authors:  Arzu Ozek; Ciğdem Albayrak; Mustafa Odabaşoğlu; Orhan Büyükgüngör
Journal:  Acta Crystallogr C       Date:  2007-02-17       Impact factor: 1.172

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  3 in total
  2 in total

1.  (Z)-6-[(5-Chloro-2-hydroxy-anilino)-methyl-ene]-4-methoxy-cyclo-hexa-2,4-dienone 0.25-hydrate.

Authors:  Arzu Ozek; Orhan Büyükgüngör; Ciğdem Albayrak; Mustafa Odabaşoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-25

2.  (Z)-6-[(5-Chloro-2-hydroxy-phenyl)-aminomethyl-ene]-2-ethoxy-cyclo-hexa-2,4-dienone.

Authors:  Arzu Ozek; Ciğdem Albayrak; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-15
  2 in total

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