Literature DB >> 15846525

Temperature dependence of methyl-coenzyme M reductase activity and of the formation of the methyl-coenzyme M reductase red2 state induced by coenzyme B.

Meike Goenrich1, Evert C Duin, Felix Mahlert, Rudolf K Thauer.   

Abstract

Methyl-coenzyme M reductase (MCR) catalyses the formation of methane from methyl-coenzyme M (CH(3)-S-CoM) and coenzyme B (HS-CoB) in methanogenic archaea. The enzyme has an alpha(2)beta(2)gamma(2) subunit structure forming two structurally interlinked active sites each with a molecule F(430) as a prosthetic group. The nickel porphinoid must be in the Ni(I) oxidation state for the enzyme to be active. The active enzyme exhibits an axial Ni(I)-based electron paramagnetic resonance (EPR) signal and a UV-vis spectrum with an absorption maximum at 385 nm. This state is called the MCR-red1 state. In the presence of coenzyme M (HS-CoM) and coenzyme B the MCR-red1 state is in part converted reversibly into the MCR-red2 state, which shows a rhombic Ni(I)-based EPR signal and a UV-vis spectrum with an absorption maximum at 420 nm. We report here for MCR from Methanothermobacter marburgensis that the MCR-red2 state is also induced by several coenzyme B analogues and that the degree of induction by coenzyme B is temperature-dependent. When the temperature was lowered below 20 degrees C the percentage of MCR in the red2 state decreased and that in the red1 state increased. These changes with temperature were fully reversible. It was found that at most 50% of the enzyme was converted to the MCR-red2 state under all experimental conditions. These findings indicate that in the presence of both coenzyme M and coenzyme B only one of the two active sites of MCR can be in the red2 state (half-of-the-sites reactivity). On the basis of this interpretation a two-stroke engine mechanism for MCR is proposed.

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Year:  2005        PMID: 15846525     DOI: 10.1007/s00775-005-0636-6

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  41 in total

1.  Coenzyme B induced coordination of coenzyme M via its thiol group to Ni(I) of F430 in active methyl-coenzyme M reductase.

Authors:  Cinzia Finazzo; Jeffrey Harmer; Carsten Bauer; Bernhard Jaun; Evert C Duin; Felix Mahlert; Meike Goenrich; Rudolf K Thauer; Sabine Van Doorslaer; Arthur Schweiger
Journal:  J Am Chem Soc       Date:  2003-04-30       Impact factor: 15.419

2.  Two genetically distinct methyl-coenzyme M reductases in Methanobacterium thermoautotrophicum strain Marburg and delta H.

Authors:  S Rospert; D Linder; J Ellermann; R K Thauer
Journal:  Eur J Biochem       Date:  1990-12-27

3.  Two-substrate association with the 20S proteasome at single-molecule level.

Authors:  Silke Hutschenreiter; Ali Tinazli; Kirstin Model; Robert Tampé
Journal:  EMBO J       Date:  2004-06-03       Impact factor: 11.598

4.  Mechanistic studies of methane biogenesis by methyl-coenzyme M reductase: evidence that coenzyme B participates in cleaving the C-S bond of methyl-coenzyme M.

Authors:  Y C Horng; D F Becker; S W Ragsdale
Journal:  Biochemistry       Date:  2001-10-30       Impact factor: 3.162

5.  Characterization of the MCRred2 form of methyl-coenzyme M reductase: a pulse EPR and ENDOR study.

Authors:  Cinzia Finazzo; Jeffrey Harmer; Bernhard Jaun; Evert C Duin; Felix Mahlert; Rudolf K Thauer; Sabine Van Doorslaer; Arthur Schweiger
Journal:  J Biol Inorg Chem       Date:  2003-03-06       Impact factor: 3.358

6.  The final step in methane formation. Investigations with highly purified methyl-CoM reductase (component C) from Methanobacterium thermoautotrophicum (strain Marburg).

Authors:  J Ellermann; R Hedderich; R Böcher; R K Thauer
Journal:  Eur J Biochem       Date:  1988-03-15

7.  On the mechanism of biological methane formation: structural evidence for conformational changes in methyl-coenzyme M reductase upon substrate binding.

Authors:  W Grabarse; F Mahlert; E C Duin; M Goubeaud; S Shima; R K Thauer; V Lamzin; U Ermler
Journal:  J Mol Biol       Date:  2001-05-25       Impact factor: 5.469

8.  Structural modifications and kinetic studies of the substrates involved in the final step of methane formation in Methanobacterium thermoautotrophicum.

Authors:  K D Olson; L Chmurkowska-Cichowlas; C W McMahon; R S Wolfe
Journal:  J Bacteriol       Date:  1992-02       Impact factor: 3.490

9.  Identification of methyl coenzyme M reductase A (mcrA) genes associated with methane-oxidizing archaea.

Authors:  Steven J Hallam; Peter R Girguis; Christina M Preston; Paul M Richardson; Edward F DeLong
Journal:  Appl Environ Microbiol       Date:  2003-09       Impact factor: 4.792

10.  Spectroscopic investigation of the nickel-containing porphinoid cofactor F(430). Comparison of the free cofactor in the (+)1, (+)2 and (+)3 oxidation states with the cofactor bound to methyl-coenzyme M reductase in the silent, red and ox forms.

Authors:  Evert C Duin; Luca Signor; Rafal Piskorski; Felix Mahlert; Michael D Clay; Meike Goenrich; Rudolf K Thauer; Bernhard Jaun; Michael K Johnson
Journal:  J Biol Inorg Chem       Date:  2004-05-25       Impact factor: 3.358

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  17 in total

Review 1.  Biosynthesis and Chemical Applications of Thioamides.

Authors:  Nilkamal Mahanta; D Miklos Szantai-Kis; E James Petersson; Douglas A Mitchell
Journal:  ACS Chem Biol       Date:  2019-01-30       Impact factor: 5.100

2.  Observation of organometallic and radical intermediates formed during the reaction of methyl-coenzyme M reductase with bromoethanesulfonate.

Authors:  Xianghui Li; Joshua Telser; Ryan C Kunz; Brian M Hoffman; Gary Gerfen; Stephen W Ragsdale
Journal:  Biochemistry       Date:  2010-08-17       Impact factor: 3.162

Review 3.  Methane oxidation by anaerobic archaea for conversion to liquid fuels.

Authors:  Thomas J Mueller; Matthew J Grisewood; Hadi Nazem-Bokaee; Saratram Gopalakrishnan; James G Ferry; Thomas K Wood; Costas D Maranas
Journal:  J Ind Microbiol Biotechnol       Date:  2014-11-27       Impact factor: 3.346

4.  Structural insight into methyl-coenzyme M reductase chemistry using coenzyme B analogues .

Authors:  Peder E Cedervall; Mishtu Dey; Arwen R Pearson; Stephen W Ragsdale; Carrie M Wilmot
Journal:  Biochemistry       Date:  2010-09-07       Impact factor: 3.162

5.  The reaction mechanism of methyl-coenzyme M reductase: how an enzyme enforces strict binding order.

Authors:  Thanyaporn Wongnate; Stephen W Ragsdale
Journal:  J Biol Chem       Date:  2015-02-17       Impact factor: 5.157

Review 6.  Structure-function relationships of anaerobic gas-processing metalloenzymes.

Authors:  Juan C Fontecilla-Camps; Patricia Amara; Christine Cavazza; Yvain Nicolet; Anne Volbeda
Journal:  Nature       Date:  2009-08-13       Impact factor: 49.962

7.  Characterization of alkyl-nickel adducts generated by reaction of methyl-coenzyme m reductase with brominated acids.

Authors:  Mishtu Dey; Ryan C Kunz; Derek M Lyons; Stephen W Ragsdale
Journal:  Biochemistry       Date:  2007-09-29       Impact factor: 3.162

8.  Two sub-states of the red2 state of methyl-coenzyme M reductase revealed by high-field EPR spectroscopy.

Authors:  Denise I Kern; Meike Goenrich; Bernhard Jaun; Rudolf K Thauer; Jeffrey Harmer; Dariush Hinderberger
Journal:  J Biol Inorg Chem       Date:  2007-08-10       Impact factor: 3.358

9.  Coordination and binding geometry of methyl-coenzyme M in the red1m state of methyl-coenzyme M reductase.

Authors:  Dariush Hinderberger; Sieglinde Ebner; Stefan Mayr; Bernhard Jaun; Markus Reiher; Meike Goenrich; Rudolf K Thauer; Jeffrey Harmer
Journal:  J Biol Inorg Chem       Date:  2008-08-19       Impact factor: 3.358

10.  Correlation of methane production and functional gene transcriptional activity in a peat soil.

Authors:  Thomas E Freitag; James I Prosser
Journal:  Appl Environ Microbiol       Date:  2009-09-11       Impact factor: 4.792

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