Literature DB >> 15160314

Spectroscopic investigation of the nickel-containing porphinoid cofactor F(430). Comparison of the free cofactor in the (+)1, (+)2 and (+)3 oxidation states with the cofactor bound to methyl-coenzyme M reductase in the silent, red and ox forms.

Evert C Duin1, Luca Signor, Rafal Piskorski, Felix Mahlert, Michael D Clay, Meike Goenrich, Rudolf K Thauer, Bernhard Jaun, Michael K Johnson.   

Abstract

Methyl-coenzyme M reductase (MCR) catalyzes the methane-forming step in methanogenic archaea. It contains the nickel porphinoid F(430), a prosthetic group that has been proposed to be directly involved in the catalytic cycle by the direct binding and subsequent reduction of the substrate methyl-coenzyme M. The active enzyme (MCRred1) can be generated in vivo and in vitro by reduction from MCRox1, which is an inactive form of the enzyme. Both the MCRred1 and MCRox1 forms have been proposed to contain F(430) in the Ni(I) oxidation state on the basis of EPR and ENDOR data. In order to further address the oxidation state of the Ni center in F(430), variable-temperature, variable-field magnetic circular dichroism (VTVH MCD), coupled with parallel absorption and EPR studies, have been used to compare the electronic and magnetic properties of MCRred1, MCRox1, and various EPR silent forms of MCR, with those of the isolated penta-methylated cofactor (F(430)M) in the (+)1, (+)2 and (+)3 oxidation states. The results confirm Ni(I) assignments for MCRred1 and MCRred2 forms of MCR and reveal charge transfer transitions involving the Ni d orbitals and the macrocycle pi orbitals that are unique to Ni(I) forms of F(430). Ligand field transitions associated with S=1 Ni(II) centers are assigned in the near-IR MCD spectra of MCRox1-silent and MCR-silent, and the splitting in the lowest energy d-d transition is shown to correlate qualitatively with assessments of the zero-field splitting parameters determined by analysis of VTVH MCD saturation magnetization data. The MCD studies also support rationalization of MCRox1 as a tetragonally compressed Ni(III) center with an axial thiolate ligand or a coupled Ni(II)-thiyl radical species, with the reality probably lying between these two extremes. The reinterpretation of MCRox1 as a formal Ni(III) species rather than an Ni(I) species obviates the need to invoke a two-electron reduction of the F(430) macrocyclic ligand on reductive activation of MCRox1 to yield MCRred1.

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Year:  2004        PMID: 15160314     DOI: 10.1007/s00775-004-0549-9

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  29 in total

1.  Coenzyme B induced coordination of coenzyme M via its thiol group to Ni(I) of F430 in active methyl-coenzyme M reductase.

Authors:  Cinzia Finazzo; Jeffrey Harmer; Carsten Bauer; Bernhard Jaun; Evert C Duin; Felix Mahlert; Meike Goenrich; Rudolf K Thauer; Sabine Van Doorslaer; Arthur Schweiger
Journal:  J Am Chem Soc       Date:  2003-04-30       Impact factor: 15.419

2.  X-ray absorption and resonance Raman studies of methyl-coenzyme M reductase indicating that ligand exchange and macrocycle reduction accompany reductive activation.

Authors:  Qun Tang; Paul E Carrington; Yih-Chern Horng; Michael J Maroney; Stephen W Ragsdale; David F Bocian
Journal:  J Am Chem Soc       Date:  2002-11-06       Impact factor: 15.419

3.  Coordination chemistry of F430. Axial ligation equilibrium between square-planar and bis-aquo species in aqueous solution.

Authors:  A K Shiemke; J A Shelnutt; R A Scott
Journal:  J Biol Chem       Date:  1989-07-05       Impact factor: 5.157

4.  Characterization of the MCRred2 form of methyl-coenzyme M reductase: a pulse EPR and ENDOR study.

Authors:  Cinzia Finazzo; Jeffrey Harmer; Bernhard Jaun; Evert C Duin; Felix Mahlert; Rudolf K Thauer; Sabine Van Doorslaer; Arthur Schweiger
Journal:  J Biol Inorg Chem       Date:  2003-03-06       Impact factor: 3.358

Review 5.  Variable-temperature magnetic circular dichroism.

Authors:  A J Thomson; M R Cheesman; S J George
Journal:  Methods Enzymol       Date:  1993       Impact factor: 1.600

6.  New insights, ideas and unanswered questions concerning iron-sulfur clusters in mitochondria.

Authors:  H Beinert; S P Albracht
Journal:  Biochim Biophys Acta       Date:  1982-12-31

7.  The final step in methane formation. Investigations with highly purified methyl-CoM reductase (component C) from Methanobacterium thermoautotrophicum (strain Marburg).

Authors:  J Ellermann; R Hedderich; R Böcher; R K Thauer
Journal:  Eur J Biochem       Date:  1988-03-15

8.  On the mechanism of biological methane formation: structural evidence for conformational changes in methyl-coenzyme M reductase upon substrate binding.

Authors:  W Grabarse; F Mahlert; E C Duin; M Goubeaud; S Shima; R K Thauer; V Lamzin; U Ermler
Journal:  J Mol Biol       Date:  2001-05-25       Impact factor: 5.469

9.  MCD C-Term Signs, Saturation Behavior, and Determination of Band Polarizations in Randomly Oriented Systems with Spin S >/= (1)/(2). Applications to S = (1)/(2) and S = (5)/(2).

Authors:  Frank Neese; Edward I. Solomon
Journal:  Inorg Chem       Date:  1999-04-19       Impact factor: 5.165

10.  The magnetic and electronic properties of Methanobacterium thermoautotrophicum (strain delta H) methyl coenzyme M reductase and its nickel tetrapyrrole cofactor F430. A low temperature magnetic circular dichroism study.

Authors:  C L Hamilton; R A Scott; M K Johnson
Journal:  J Biol Chem       Date:  1989-07-15       Impact factor: 5.157

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  12 in total

1.  Expression and association of group IV nitrogenase NifD and NifH homologs in the non-nitrogen-fixing archaeon Methanocaldococcus jannaschii.

Authors:  Christopher R Staples; Surobhi Lahiri; Jason Raymond; Lindsay Von Herbulis; Biswarup Mukhophadhyay; Robert E Blankenship
Journal:  J Bacteriol       Date:  2007-07-27       Impact factor: 3.490

2.  Temperature dependence of methyl-coenzyme M reductase activity and of the formation of the methyl-coenzyme M reductase red2 state induced by coenzyme B.

Authors:  Meike Goenrich; Evert C Duin; Felix Mahlert; Rudolf K Thauer
Journal:  J Biol Inorg Chem       Date:  2005-04-22       Impact factor: 3.358

3.  Structural insight into methyl-coenzyme M reductase chemistry using coenzyme B analogues .

Authors:  Peder E Cedervall; Mishtu Dey; Arwen R Pearson; Stephen W Ragsdale; Carrie M Wilmot
Journal:  Biochemistry       Date:  2010-09-07       Impact factor: 3.162

4.  Spectroscopic and computational studies of reduction of the metal versus the tetrapyrrole ring of coenzyme F430 from methyl-coenzyme M reductase.

Authors:  Mishtu Dey; Ryan C Kunz; Katherine M Van Heuvelen; Jennifer L Craft; Yih-Chern Horng; Qun Tang; David F Bocian; Simon J George; Thomas C Brunold; Stephen W Ragsdale
Journal:  Biochemistry       Date:  2006-10-03       Impact factor: 3.162

5.  BIOCHEMISTRY. Methane--make it or break it.

Authors:  Thomas J Lawton; Amy C Rosenzweig
Journal:  Science       Date:  2016-05-20       Impact factor: 47.728

6.  Mode of action uncovered for the specific reduction of methane emissions from ruminants by the small molecule 3-nitrooxypropanol.

Authors:  Evert C Duin; Tristan Wagner; Seigo Shima; Divya Prakash; Bryan Cronin; David R Yáñez-Ruiz; Stephane Duval; Robert Rümbeli; René T Stemmler; Rudolf Kurt Thauer; Maik Kindermann
Journal:  Proc Natl Acad Sci U S A       Date:  2016-05-02       Impact factor: 11.205

7.  Two sub-states of the red2 state of methyl-coenzyme M reductase revealed by high-field EPR spectroscopy.

Authors:  Denise I Kern; Meike Goenrich; Bernhard Jaun; Rudolf K Thauer; Jeffrey Harmer; Dariush Hinderberger
Journal:  J Biol Inorg Chem       Date:  2007-08-10       Impact factor: 3.358

8.  Coordination and binding geometry of methyl-coenzyme M in the red1m state of methyl-coenzyme M reductase.

Authors:  Dariush Hinderberger; Sieglinde Ebner; Stefan Mayr; Bernhard Jaun; Markus Reiher; Meike Goenrich; Rudolf K Thauer; Jeffrey Harmer
Journal:  J Biol Inorg Chem       Date:  2008-08-19       Impact factor: 3.358

9.  In vivo activation of methyl-coenzyme M reductase by carbon monoxide.

Authors:  Yuzhen Zhou; Alexandria E Dorchak; Stephen W Ragsdale
Journal:  Front Microbiol       Date:  2013-04-01       Impact factor: 5.640

10.  Geometric and electronic structures of the Ni(I) and methyl-Ni(III) intermediates of methyl-coenzyme M reductase.

Authors:  Ritimukta Sarangi; Mishtu Dey; Stephen W Ragsdale
Journal:  Biochemistry       Date:  2009-04-14       Impact factor: 3.162

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