Literature DB >> 16328424

Y-chromosomal STR haplotypes in a Northeast Italian population sample using 17plex loci PCR assay.

Stefania Turrina1, Renzo Atzei, Domenico De Leo.   

Abstract

One hundred fifty-five unrelated, autochthonous healthy males from Northeast Italy were typed for the 17 Y-chromosome short tandem repeat (STR) (Y-STR) loci DYS456, DYS389I, DYS390, DYS389II, DYS458, DYS19, DYS385, DYS393, DYS391, DYS439, DYS635, DYS392, Y GATA H4, DYS437, DYS438, DYS448 using the AmpFLSTR Yfiler polymerase chain reaction amplification kit. A total of 153 different haplotypes were observed, and among these, 151 were unique, while 2 were found two times. The overall haplotype diversity was 0.9997. Furthermore, 50 father-son pairs, previously confirmed by autosomal STR analysis, were typed using the same set of 17 Y-STR loci, and, among 850 allele transfers, three mutation events were identified, giving an average mutation rate of 3.53 x 10(-3) per locus per generation (95% confidence interval 0.73-1.03).

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Year:  2005        PMID: 16328424     DOI: 10.1007/s00414-005-0054-x

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.686


  14 in total

1.  Characteristics and frequency of germline mutations at microsatellite loci from the human Y chromosome, as revealed by direct observation in father/son pairs.

Authors:  M Kayser; L Roewer; M Hedman; L Henke; J Henke; S Brauer; C Krüger; M Krawczak; M Nagy; T Dobosz; R Szibor; P de Knijff; M Stoneking; A Sajantila
Journal:  Am J Hum Genet       Date:  2000-04-06       Impact factor: 11.025

2.  Y-chromosome variation in a Norwegian population sample.

Authors:  B M Dupuy; R Andreassen; A G Flønes; K Tomassen; T Egeland; M Brion; A Carracedo; B Olaisen
Journal:  Forensic Sci Int       Date:  2001-04-01       Impact factor: 2.395

3.  Y-STR DNA amplification as biological evidence in sexually assaulted female victims with no cytological detection of spermatozoa.

Authors:  I Sibille; C Duverneuil; G Lorin de la Grandmaison; K Guerrouache; F Teissière; M Durigon; P de Mazancourt
Journal:  Forensic Sci Int       Date:  2002-02-18       Impact factor: 2.395

4.  When autosomal short tandem repeats fail: optimized primer and reaction design for Y-chromosome short tandem repeat analysis in forensic casework.

Authors:  W Parson; H Niederstätter; S Köchl; M Steinlechner; B Berger
Journal:  Croat Med J       Date:  2001-06       Impact factor: 1.351

5.  Haplotype analysis with 14 Y-STR loci using 2 multiplex amplification and typing systems in 2 regional populations in Japan.

Authors:  Rieko Uchihi; Toshimichi Yamamoto; Kanako Usuda; Takashi Yoshimoto; Miwa Tanaka; Seisaku Tokunaga; Rina Kurihara; Katsushi Tokunaga; Yoshinao Katsumata
Journal:  Int J Legal Med       Date:  2003-01-10       Impact factor: 2.686

Review 6.  DNA Commission of the International Society of Forensic Genetics (ISFG): an update of the recommendations on the use of Y-STRs in forensic analysis.

Authors:  L Gusmão; J M Butler; A Carracedo; P Gill; M Kayser; W R Mayr; N Morling; M Prinz; L Roewer; C Tyler-Smith; P M Schneider
Journal:  Int J Legal Med       Date:  2006-07       Impact factor: 2.686

7.  Evaluation of Y-chromosomal STRs: a multicenter study.

Authors:  M Kayser; A Caglià; D Corach; N Fretwell; C Gehrig; G Graziosi; F Heidorn; S Herrmann; B Herzog; M Hidding; K Honda; M Jobling; M Krawczak; K Leim; S Meuser; E Meyer; W Oesterreich; A Pandya; W Parson; G Penacino; A Perez-Lezaun; A Piccinini; M Prinz; C Schmitt; L Roewer
Journal:  Int J Legal Med       Date:  1997       Impact factor: 2.686

8.  Y-STR typing of an Austrian population sample using a 17-loci multiplex PCR assay.

Authors:  Burkhard Berger; Alexandra Lindinger; Harald Niederstätter; Petra Grubwieser; Walther Parson
Journal:  Int J Legal Med       Date:  2005-04-21       Impact factor: 2.686

9.  High resolution Y chromosome typing: 19 STRs amplified in three multiplex reactions.

Authors:  Elena Bosch; Andrew C Lee; Francesc Calafell; Eduardo Arroyo; Peter Henneman; Peter de Knijff; Mark A Jobling
Journal:  Forensic Sci Int       Date:  2002-01-24       Impact factor: 2.395

10.  High-throughput Y-STR typing of U.S. populations with 27 regions of the Y chromosome using two multiplex PCR assays.

Authors:  Richard Schoske; Peter M Vallone; Margaret C Kline; Janette W Redman; John M Butler
Journal:  Forensic Sci Int       Date:  2004-01-28       Impact factor: 2.395

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  17 in total

1.  Y-STR variation in the Basque diaspora in the Western USA: evolutionary and forensic perspectives.

Authors:  Laura Valverde; Melania Rosique; Stephan Köhnemann; Sergio Cardoso; Ainara García; Adrián Odriozola; Jose María Aznar; David Celorrio; Marianne Schuerenkamp; Josu Zubizarreta; Michael C Davis; Greg Hampikian; Heidi Pfeiffer; Marian M de Pancorbo
Journal:  Int J Legal Med       Date:  2011-11-13       Impact factor: 2.686

2.  Empirical evaluation reveals best fit of a logistic mutation model for human Y-chromosomal microsatellites.

Authors:  Arne Jochens; Amke Caliebe; Uwe Rösler; Michael Krawczak
Journal:  Genetics       Date:  2011-10-03       Impact factor: 4.562

3.  Y-STR variation in Albanian populations: implications on the match probabilities and the genetic legacy of the minority claiming an Egyptian descent.

Authors:  Gianmarco Ferri; Sergio Tofanelli; Milena Alù; Luca Taglioli; Erjon Radheshi; Beatrice Corradini; Giorgio Paoli; Cristian Capelli; Giovanni Beduschi
Journal:  Int J Legal Med       Date:  2010-03-18       Impact factor: 2.686

4.  Evaluation of miniY-STR multiplex PCR systems for extended 16 Y-STR loci.

Authors:  H Asamura; S Fujimori; M Ota; T Oki; H Fukushima
Journal:  Int J Legal Med       Date:  2007-09-26       Impact factor: 2.686

5.  Non-invasive prenatal paternity testing from maternal blood.

Authors:  Jasenka Wagner; Snjezana Dzijan; Damir Marjanović; Gordan Lauc
Journal:  Int J Legal Med       Date:  2008-10-24       Impact factor: 2.686

6.  Haplotype data and mutation rates for the 23 Y-STR loci of PowerPlex® Y 23 System in a Northeast Italian population sample.

Authors:  Stefania Turrina; Stefano Caratti; Melissa Ferrian; Domenico De Leo
Journal:  Int J Legal Med       Date:  2014-08-07       Impact factor: 2.686

7.  Croatian national reference Y-STR haplotype database.

Authors:  Gordan Mršić; Branka Gršković; Andro Vrdoljak; Maja Popović; Ivica Valpotić; Šimun Anđelinović; Vlastimil Stenzl; Edvard Ehler; Ludvik Urban; Gordana Lacković; Peter Underhill; Dragan Primorac
Journal:  Mol Biol Rep       Date:  2012-03-06       Impact factor: 2.316

8.  Comprehensive mutation analysis of 17 Y-chromosomal short tandem repeat polymorphisms included in the AmpFlSTR Yfiler PCR amplification kit.

Authors:  Miriam Goedbloed; Mark Vermeulen; Rixun N Fang; Maria Lembring; Andreas Wollstein; Kaye Ballantyne; Oscar Lao; Silke Brauer; Carmen Krüger; Lutz Roewer; Rüdiger Lessig; Rafal Ploski; Tadeusz Dobosz; Lotte Henke; Jürgen Henke; Manohar R Furtado; Manfred Kayser
Journal:  Int J Legal Med       Date:  2009-03-26       Impact factor: 2.686

9.  Haplotypes of 20 Y-chromosomal STRs in a population sample from southeast China (Chaoshan area).

Authors:  Mei Sen Shi; Jian Pin Tang; Ru Feng Bai; Xiao Jun Yu; Jun Yao Lv; Bo Hu
Journal:  Int J Legal Med       Date:  2007-07-20       Impact factor: 2.686

10.  Genetic structure of nomadic Bedouin from Kuwait.

Authors:  T Mohammad; Y Xue; M Evison; C Tyler-Smith
Journal:  Heredity (Edinb)       Date:  2009-07-29       Impact factor: 3.821

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