Literature DB >> 20396930

Comparison of fast backbone dynamics at amide nitrogen and carbonyl sites in dematin headpiece C-terminal domain and its S74E mutant.

Liliya Vugmeyster1, Dmitry Ostrovsky, Ying Li.   

Abstract

We perform a detailed comparison of fast backbone dynamics probed at amide nitrogen versus carbonyl carbon sites for dematin headpiece C-terminal domain (DHP) and its S74E mutant (DHPS74E). Carbonyl dynamics is probed via auto-correlated longitudinal rates and transverse C'/C'-C(alpha) CSA/dipolar and C'/C'-N CSA/dipolar cross-correlated rates, while (15)N data are taken from a previous study. Resulting values of effective order parameters and internal correlation times support the conclusion that C' relaxation reports on a different subset of fast motions compared to those probed at N-H bond vectors in the same peptide planes. (13)C' order parameters are on the average 0.08 lower than (15)N order parameters with the exception of the flexible loop region in DHP. The reduction of mobility in the loop region upon the S74E mutation can be seen from the (15)N order parameters but not from the (13)C order parameters. Internal correlation times at (13)C' sites are on the average an order of magnitude longer than those at (15)N sites for the well-structured C-terminal subdomains, while the more flexible N-terminal subdomains have more comparable average internal correlation times.

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Year:  2010        PMID: 20396930     DOI: 10.1007/s10858-010-9417-9

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  36 in total

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Authors:  V Tugarinov; Z Liang; Y E Shapiro; J H Freed; E Meirovitch
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Journal:  Biochemistry       Date:  2002-02-26       Impact factor: 3.162

3.  Temperature dependence of anisotropic protein backbone dynamics.

Authors:  Tianzhi Wang; Sheng Cai; Erik R P Zuiderweg
Journal:  J Am Chem Soc       Date:  2003-07-16       Impact factor: 15.419

4.  Determination of chemical shift anisotropy tensors of carbonyl nuclei in proteins through cross-correlated relaxation in NMR.

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Journal:  Chemphyschem       Date:  2004-06-21       Impact factor: 3.102

5.  Site-specific variations of carbonyl chemical shift anisotropies in proteins.

Authors:  Phineus R L Markwick; Michael Sattler
Journal:  J Am Chem Soc       Date:  2004-09-22       Impact factor: 15.419

6.  A study of protein side-chain dynamics from new 2H auto-correlation and 13C cross-correlation NMR experiments: application to the N-terminal SH3 domain from drk.

Authors:  D Yang; A Mittermaier; Y K Mok; L E Kay
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7.  Correlated dynamics of consecutive residues reveal transient and cooperative unfolding of secondary structure in proteins.

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Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-08       Impact factor: 11.205

8.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

9.  Phosphorylation-induced changes in backbone dynamics of the dematin headpiece C-terminal domain.

Authors:  Liliya Vugmeyster; C James McKnight
Journal:  J Biomol NMR       Date:  2008-11-22       Impact factor: 2.835

10.  Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxation.

Authors:  N A Farrow; R Muhandiram; A U Singer; S M Pascal; C M Kay; G Gish; S E Shoelson; T Pawson; J D Forman-Kay; L E Kay
Journal:  Biochemistry       Date:  1994-05-17       Impact factor: 3.162

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  2 in total

1.  Temperature dependence of fast carbonyl backbone dynamics in chicken villin headpiece subdomain.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky
Journal:  J Biomol NMR       Date:  2011-03-17       Impact factor: 2.835

2.  Correlated motions of C'-N and Cα-Cβ pairs in protonated and per-deuterated GB3.

Authors:  Liliya Vugmeyster; Aaron Griffin; Dmitry Ostrovsky; Shibani Bhattacharya; Parker J Nichols; C James McKnight; Beat Vögeli
Journal:  J Biomol NMR       Date:  2018-08-18       Impact factor: 2.835

  2 in total

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