Literature DB >> 15811792

Probing metal-protein interactions using a de novo design approach.

Debdip Ghosh1, Vincent L Pecoraro.   

Abstract

De novo design of metalloproteins provides a valuable tool for understanding the structural constraints and functional attributes of natural biological systems using first principles. This review focuses on recent research aimed primarily at probing the subtle interactions between metals and proteins in designed systems. Considerable attention has focussed on redefining novel design methods used in mimicking natural hemeproteins, mononuclear and dinuclear metallopeptides and functional biological electron-transfer proteins. The present results indicate that the field of metalloprotein design is contributing significantly to the understanding of metals in biology.

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Year:  2005        PMID: 15811792     DOI: 10.1016/j.cbpa.2005.02.005

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  25 in total

1.  Designing functional metalloproteins: from structural to catalytic metal sites.

Authors:  Melissa L Zastrow; Vincent L Pecoraro
Journal:  Coord Chem Rev       Date:  2013-09       Impact factor: 22.315

2.  A designed functional metalloenzyme that reduces O2 to H2O with over one thousand turnovers.

Authors:  Kyle D Miner; Arnab Mukherjee; Yi-Gui Gao; Eric L Null; Igor D Petrik; Xuan Zhao; Natasha Yeung; Howard Robinson; Yi Lu
Journal:  Angew Chem Int Ed Engl       Date:  2012-04-26       Impact factor: 15.336

3.  Covalent Anchor Positions Play an Important Role in Tuning Catalytic Properties of a Rationally Designed MnSalen-containing Metalloenzyme.

Authors:  Dewain K Garner; Lei Liang; David A Barrios; Jun-Long Zhang; Yi Lu
Journal:  ACS Catal       Date:  2011-09-02       Impact factor: 13.084

4.  Protein scaffold of a designed metalloenzyme enhances the chemoselectivity in sulfoxidation of thioanisole.

Authors:  Jun-Long Zhang; Dewain K Garner; Lei Liang; Qian Chen; Yi Lu
Journal:  Chem Commun (Camb)       Date:  2008-02-04       Impact factor: 6.222

5.  Lead(II) Binding in Natural and Artificial Proteins.

Authors:  Virginia Cangelosi; Leela Ruckthong; Vincent L Pecoraro
Journal:  Met Ions Life Sci       Date:  2017-04-10

6.  Tetrahydrofuranyl and tetrahydropyranyl protection of amino acid side-chains enables synthesis of a hydroxamate-containing aminoacylated tRNA.

Authors:  Lester J Lambert; Marvin J Miller; Paul W Huber
Journal:  Org Biomol Chem       Date:  2015-02-28       Impact factor: 3.876

Review 7.  Protein design: toward functional metalloenzymes.

Authors:  Fangting Yu; Virginia M Cangelosi; Melissa L Zastrow; Matteo Tegoni; Jefferson S Plegaria; Alison G Tebo; Catherine S Mocny; Leela Ruckthong; Hira Qayyum; Vincent L Pecoraro
Journal:  Chem Rev       Date:  2014-03-24       Impact factor: 60.622

8.  Computational design of virus-like protein assemblies on carbon nanotube surfaces.

Authors:  Gevorg Grigoryan; Yong Ho Kim; Rudresh Acharya; Kevin Axelrod; Rishabh M Jain; Lauren Willis; Marija Drndic; James M Kikkawa; William F DeGrado
Journal:  Science       Date:  2011-05-27       Impact factor: 47.728

9.  Prediction of structures of zinc-binding proteins through explicit modeling of metal coordination geometry.

Authors:  Chu Wang; Robert Vernon; Oliver Lange; Michael Tyka; David Baker
Journal:  Protein Sci       Date:  2010-03       Impact factor: 6.725

10.  Probing the coordination environment of the human copper chaperone HAH1: characterization of Hg(II)-bridged homodimeric species in solution.

Authors:  Marek Łuczkowski; Brian A Zeider; Alia V H Hinz; Monika Stachura; Saumen Chakraborty; Lars Hemmingsen; David L Huffman; Vincent L Pecoraro
Journal:  Chemistry       Date:  2013-05-15       Impact factor: 5.236

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