Literature DB >> 15808849

Crystal structure of a type-II cohesin module from the Bacteroides cellulosolvens cellulosome reveals novel and distinctive secondary structural elements.

Ilit Noach1, Felix Frolow, Hilla Jakoby, Sonia Rosenheck, Lindaj W Shimon, Raphael Lamed, Edward A Bayer.   

Abstract

The incorporation of enzymes into the multi-enzyme cellulosome complex and its anchoring to the bacterial cell surface are dictated by a set of binding interactions between two complementary protein modules: the cohesin and the dockerin. In this work, the X-ray crystal structure of a type-II cohesin from scaffoldin A of Bacteroides cellulosolvens has been determined to a resolution of 1.6 angstroms using molecular replacement. The type-II B. cellulosolvens cohesin (Bc-cohesin-II) is the first detailed description of a crystal structure for a type-II cohesin, and its features were compared with the known type-I cohesins from Clostridium thermocellum and Clostridium cellulolyticum (Ct-cohesin-I and Cc-cohesin-I, respectively). The overall jelly-roll topology of the type-II Bc-cohesin is very similar to that observed for the type-I cohesins with three additional secondary structures: an alpha-helix and two "beta-flaps" that disrupt the normal course of a beta-strand. In addition, beta-strand 5 is elevated by approximately 4 angstroms on the surface of the molecule, relative to the type-I Ct and Cc-cohesins. Like its type-I analogue, the hydrophobic/aromatic core of Bc-cohesin-II comprises an upper and lower core, but an additional aromatic patch and conserved tryptophan at the crown of the molecule serves to stabilize the alpha-helix of the type-II cohesin. Comparison of Bc-cohesin-II with the known type-I cohesin-dockerin heterodimer suggests that each of the additional secondary structural elements assumes a flanking position relative to the putative dockerin-binding surface. The raised ridge formed by beta-strand 5 confers additional distinctive topographic features to the proposed binding interface that collectively distinguish between the type-II and type-I cohesins.

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Year:  2005        PMID: 15808849     DOI: 10.1016/j.jmb.2005.02.024

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  11 in total

1.  Scaffoldin conformation and dynamics revealed by a ternary complex from the Clostridium thermocellum cellulosome.

Authors:  Mark A Currie; Jarrett J Adams; Frédérick Faucher; Edward A Bayer; Zongchao Jia; Steven P Smith
Journal:  J Biol Chem       Date:  2012-06-15       Impact factor: 5.157

2.  Mechanism of bacterial cell-surface attachment revealed by the structure of cellulosomal type II cohesin-dockerin complex.

Authors:  Jarrett J Adams; Gour Pal; Zongchao Jia; Steven P Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-29       Impact factor: 11.205

3.  Crystallization and preliminary X-ray analysis of Acetivibrio cellulolyticus cellulosomal type II cohesin module: two versions having different linker lengths.

Authors:  Ilit Noach; Orly Alber; Edward A Bayer; Raphael Lamed; Maly Levy-Assaraf; Linda J W Shimon; Felix Frolow
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-12-20

4.  Preliminary X-ray characterization of a novel type of anchoring cohesin from the cellulosome of Ruminococcus flavefaciens.

Authors:  Orly Alber; Ilit Noach; Raphael Lamed; Linda J W Shimon; Edward A Bayer; Felix Frolow
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-01-18

Review 5.  Noncellulosomal cohesin- and dockerin-like modules in the three domains of life.

Authors:  Ayelet Peer; Steven P Smith; Edward A Bayer; Raphael Lamed; Ilya Borovok
Journal:  FEMS Microbiol Lett       Date:  2008-11-18       Impact factor: 2.742

6.  Combined Crystal Structure of a Type I Cohesin: MUTATION AND AFFINITY BINDING STUDIES REVEAL STRUCTURAL DETERMINANTS OF COHESIN-DOCKERIN SPECIFICITIES.

Authors:  Kate Cameron; Jonathan Y Weinstein; Olga Zhivin; Pedro Bule; Sarel J Fleishman; Victor D Alves; Harry J Gilbert; Luís M A Ferreira; Carlos M G A Fontes; Edward A Bayer; Shabir Najmudin
Journal:  J Biol Chem       Date:  2015-05-01       Impact factor: 5.157

7.  Evidence for a dual binding mode of dockerin modules to cohesins.

Authors:  Ana Luísa Carvalho; Fernando M V Dias; Tibor Nagy; José A M Prates; Mark R Proctor; Nicola Smith; Edward A Bayer; Gideon J Davies; Luís M A Ferreira; Maria J Romão; Carlos M G A Fontes; Harry J Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-20       Impact factor: 11.205

8.  Structural characterization of a novel autonomous cohesin from Ruminococcus flavefaciens.

Authors:  Milana Voronov-Goldman; Maly Levy-Assaraf; Oren Yaniv; Gloria Wisserman; Sadanari Jindou; Ilya Borovok; Edward A Bayer; Raphael Lamed; Linda J W Shimon; Felix Frolow
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-03-25       Impact factor: 1.056

9.  Near-Complete Genome Sequence of the Cellulolytic Bacterium Bacteroides (Pseudobacteroides) cellulosolvens ATCC 35603.

Authors:  Bareket Dassa; Sagar Utturkar; Richard A Hurt; Dawn M Klingeman; Martin Keller; Jian Xu; Y Harish Kumar Reddy; Ilya Borovok; Inna Rozman Grinberg; Raphael Lamed; Olga Zhivin; Edward A Bayer; Steven D Brown
Journal:  Genome Announc       Date:  2015-09-24

10.  Diverse specificity of cellulosome attachment to the bacterial cell surface.

Authors:  Joana L A Brás; Benedita A Pinheiro; Kate Cameron; Fiona Cuskin; Aldino Viegas; Shabir Najmudin; Pedro Bule; Virginia M R Pires; Maria João Romão; Edward A Bayer; Holly L Spencer; Steven Smith; Harry J Gilbert; Victor D Alves; Ana Luísa Carvalho; Carlos M G A Fontes
Journal:  Sci Rep       Date:  2016-12-07       Impact factor: 4.379

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