Literature DB >> 24699736

Structural characterization of a novel autonomous cohesin from Ruminococcus flavefaciens.

Milana Voronov-Goldman1, Maly Levy-Assaraf1, Oren Yaniv1, Gloria Wisserman1, Sadanari Jindou1, Ilya Borovok1, Edward A Bayer2, Raphael Lamed1, Linda J W Shimon3, Felix Frolow1.   

Abstract

Ruminococcus flavefaciens is a cellulolytic bacterium found in the rumen of herbivores and produces one of the most elaborate and variable cellulosome systems. The structure of an R. flavefaciens protein (RfCohG, ZP_06142108), representing a freestanding (non-cellulosomal) type III cohesin module, has been determined. A selenomethionine derivative with a C-terminal histidine tag was crystallized and diffraction data were measured to 2.44 Å resolution. Its structure was determined by single-wavelength anomalous dispersion, revealing eight molecules in the asymmetric unit. RfCohG exhibits the most complex among all known cohesin structures, possessing four α-helical elements and a topographical protuberance on the putative dockerin-binding surface.

Entities:  

Keywords:  cellulose degradation; cellulosome; cohesin-dockerin interaction; glycoside hydrolases; scaffoldin

Mesh:

Substances:

Year:  2014        PMID: 24699736      PMCID: PMC3976060          DOI: 10.1107/S2053230X14004051

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  28 in total

1.  Preliminary X-ray characterization and phasing of a type II cohesin domain from the cellulosome of Acetivibrio cellulolyticus.

Authors:  Ilit Noach; Raphael Lamed; Qi Xu; Sonia Rosenheck; Linda J W Shimon; Edward A Bayer; Felix Frolow
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2003-08-19

2.  Insights into the structural determinants of cohesin-dockerin specificity revealed by the crystal structure of the type II cohesin from Clostridium thermocellum SdbA.

Authors:  Ana L Carvalho; Virginia M R Pires; Tracey M Gloster; Johan P Turkenburg; José A M Prates; Luís M A Ferreira; Maria J Romão; Gideon J Davies; Carlos M G A Fontes; Harry J Gilbert
Journal:  J Mol Biol       Date:  2005-06-24       Impact factor: 5.469

Review 3.  Cellulose, cellulases and cellulosomes.

Authors:  E A Bayer; H Chanzy; R Lamed; Y Shoham
Journal:  Curr Opin Struct Biol       Date:  1998-10       Impact factor: 6.809

4.  Rapid isolation of high molecular weight plant DNA.

Authors:  M G Murray; W F Thompson
Journal:  Nucleic Acids Res       Date:  1980-10-10       Impact factor: 16.971

5.  Crystal structure of a type-II cohesin module from the Bacteroides cellulosolvens cellulosome reveals novel and distinctive secondary structural elements.

Authors:  Ilit Noach; Felix Frolow; Hilla Jakoby; Sonia Rosenheck; Lindaj W Shimon; Raphael Lamed; Edward A Bayer
Journal:  J Mol Biol       Date:  2005-04-22       Impact factor: 5.469

6.  16S rDNA sequencing of Ruminococcus albus and Ruminococcus flavefaciens: design of a signature probe and its application in adult sheep.

Authors:  Denis O Krause; Brian P Dalrymple; Wendy J Smith; Roderick I Mackie; Christopher S McSweeney
Journal:  Microbiology       Date:  1999-07       Impact factor: 2.777

7.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

8.  Strain-specific genomic regions of Ruminococcus flavefaciens FD-1 as revealed by combinatorial random-phase genome sequencing and suppressive subtractive hybridization.

Authors:  Dionysios A Antonopoulos; Karen E Nelson; Mark Morrison; Bryan A White
Journal:  Environ Microbiol       Date:  2004-04       Impact factor: 5.491

9.  Atomic structures of the human immunophilin FKBP-12 complexes with FK506 and rapamycin.

Authors:  G D Van Duyne; R F Standaert; P A Karplus; S L Schreiber; J Clardy
Journal:  J Mol Biol       Date:  1993-01-05       Impact factor: 5.469

10.  Crystal structure of an uncommon cellulosome-related protein module from Ruminococcus flavefaciens that resembles papain-like cysteine peptidases.

Authors:  Maly Levy-Assaraf; Milana Voronov-Goldman; Inna Rozman Grinberg; Gloria Weiserman; Linda J W Shimon; Sadanari Jindou; Ilya Borovok; Bryan A White; Edward A Bayer; Raphael Lamed; Felix Frolow
Journal:  PLoS One       Date:  2013-02-14       Impact factor: 3.240

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