Literature DB >> 16384918

Mechanism of bacterial cell-surface attachment revealed by the structure of cellulosomal type II cohesin-dockerin complex.

Jarrett J Adams1, Gour Pal, Zongchao Jia, Steven P Smith.   

Abstract

Bacterial cell-surface attachment of macromolecular complexes maintains the microorganism in close proximity to extracellular substrates and allows for optimal uptake of hydrolytic byproducts. The cellulosome is a large multienzyme complex used by many anaerobic bacteria for the efficient degradation of plant cell-wall polysaccharides. The mechanism of cellulosome retention to the bacterial cell surface involves a calcium-mediated protein-protein interaction between the dockerin (Doc) module from the cellulosomal scaffold and a cohesin (Coh) module of cell-surface proteins located within the proteoglycan layer. Here, we report the structure of an ultra-high-affinity (K(a) = 1.44 x 10(10) M(-1)) complex between type II Doc, together with its neighboring X module from the cellulosome scaffold of Clostridium thermocellum, and a type II Coh module associated with the bacterial cell surface. Identification of X module-Doc and X module-Coh contacts reveal roles for the X module in Doc stability and enhanced Coh recognition. This extremely tight interaction involves one face of the Coh and both helices of the Doc and comprises significant hydrophobic character and a complementary extensive hydrogen-bond network. This structure represents a unique mechanism for cell-surface attachment in anaerobic bacteria and provides a rationale for discriminating between type I and type II Coh modules.

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Year:  2005        PMID: 16384918      PMCID: PMC1326161          DOI: 10.1073/pnas.0507109103

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  46 in total

1.  Design and production of active cellulosome chimeras. Selective incorporation of dockerin-containing enzymes into defined functional complexes.

Authors:  H P Fierobe; A Mechaly; C Tardif; A Belaich; R Lamed; Y Shoham; J P Belaich; E A Bayer
Journal:  J Biol Chem       Date:  2001-04-04       Impact factor: 5.157

2.  Solution structure of a type I dockerin domain, a novel prokaryotic, extracellular calcium-binding domain.

Authors:  B L Lytle; B F Volkman; W M Westler; M P Heckman; J H Wu
Journal:  J Mol Biol       Date:  2001-03-30       Impact factor: 5.469

Review 3.  EF-hand calcium-binding proteins.

Authors:  A Lewit-Bentley; S Réty
Journal:  Curr Opin Struct Biol       Date:  2000-12       Impact factor: 6.809

4.  Mapping by site-directed mutagenesis of the region responsible for cohesin-dockerin interaction on the surface of the seventh cohesin domain of Clostridium thermocellum CipA.

Authors:  Isabelle Miras; Francis Schaeffer; Pierre Béguin; Pedro M Alzari
Journal:  Biochemistry       Date:  2002-02-19       Impact factor: 3.162

Review 5.  The cellulosome and cellulose degradation by anaerobic bacteria.

Authors:  W H Schwarz
Journal:  Appl Microbiol Biotechnol       Date:  2001-09       Impact factor: 4.813

6.  Preliminary X-ray characterization and phasing of a type II cohesin domain from the cellulosome of Acetivibrio cellulolyticus.

Authors:  Ilit Noach; Raphael Lamed; Qi Xu; Sonia Rosenheck; Linda J W Shimon; Edward A Bayer; Felix Frolow
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2003-08-19

Review 7.  Cellulase, clostridia, and ethanol.

Authors:  Arnold L Demain; Michael Newcomb; J H David Wu
Journal:  Microbiol Mol Biol Rev       Date:  2005-03       Impact factor: 11.056

8.  Duplicated dockerin subdomains of Clostridium thermocellum endoglucanase CelD bind to a cohesin domain of the scaffolding protein CipA with distinct thermodynamic parameters and a negative cooperativity.

Authors:  Francis Schaeffer; Markus Matuschek; Gérard Guglielmi; Isabelle Miras; Pedro M Alzari; Pierre Béguin
Journal:  Biochemistry       Date:  2002-02-19       Impact factor: 3.162

9.  Complete genome sequence of Clostridium perfringens, an anaerobic flesh-eater.

Authors:  Tohru Shimizu; Kaori Ohtani; Hideki Hirakawa; Kenshiro Ohshima; Atsushi Yamashita; Tadayoshi Shiba; Naotake Ogasawara; Masahira Hattori; Satoru Kuhara; Hideo Hayashi
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-15       Impact factor: 11.205

10.  1H, 13C, 15N NMR sequence-specific resonance assignment of a Clostridium thermocellum type II cohesin module.

Authors:  Steven P Smith; Pierre Béguin; Pedro M Alzari; Kalle Gehring
Journal:  J Biomol NMR       Date:  2002-05       Impact factor: 2.835

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  31 in total

1.  Scaffoldin conformation and dynamics revealed by a ternary complex from the Clostridium thermocellum cellulosome.

Authors:  Mark A Currie; Jarrett J Adams; Frédérick Faucher; Edward A Bayer; Zongchao Jia; Steven P Smith
Journal:  J Biol Chem       Date:  2012-06-15       Impact factor: 5.157

2.  Crucial roles of single residues in binding affinity, specificity, and promiscuity in the cellulosomal cohesin-dockerin interface.

Authors:  Michal Slutzki; Dan Reshef; Yoav Barak; Rachel Haimovitz; Shahar Rotem-Bamberger; Raphael Lamed; Edward A Bayer; Ora Schueler-Furman
Journal:  J Biol Chem       Date:  2015-04-01       Impact factor: 5.157

3.  Electrostatic properties of protein-protein complexes.

Authors:  Petras J Kundrotas; Emil Alexov
Journal:  Biophys J       Date:  2006-06-16       Impact factor: 4.033

4.  Enzyme-microbe synergy during cellulose hydrolysis by Clostridium thermocellum.

Authors:  Yanpin Lu; Yi-Heng Percival Zhang; Lee R Lynd
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-23       Impact factor: 11.205

5.  Crystallization and preliminary X-ray analysis of Acetivibrio cellulolyticus cellulosomal type II cohesin module: two versions having different linker lengths.

Authors:  Ilit Noach; Orly Alber; Edward A Bayer; Raphael Lamed; Maly Levy-Assaraf; Linda J W Shimon; Felix Frolow
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-12-20

6.  Preliminary X-ray characterization of a novel type of anchoring cohesin from the cellulosome of Ruminococcus flavefaciens.

Authors:  Orly Alber; Ilit Noach; Raphael Lamed; Linda J W Shimon; Edward A Bayer; Felix Frolow
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-01-18

Review 7.  Noncellulosomal cohesin- and dockerin-like modules in the three domains of life.

Authors:  Ayelet Peer; Steven P Smith; Edward A Bayer; Raphael Lamed; Ilya Borovok
Journal:  FEMS Microbiol Lett       Date:  2008-11-18       Impact factor: 2.742

8.  Combined Crystal Structure of a Type I Cohesin: MUTATION AND AFFINITY BINDING STUDIES REVEAL STRUCTURAL DETERMINANTS OF COHESIN-DOCKERIN SPECIFICITIES.

Authors:  Kate Cameron; Jonathan Y Weinstein; Olga Zhivin; Pedro Bule; Sarel J Fleishman; Victor D Alves; Harry J Gilbert; Luís M A Ferreira; Carlos M G A Fontes; Edward A Bayer; Shabir Najmudin
Journal:  J Biol Chem       Date:  2015-05-01       Impact factor: 5.157

9.  Purification, crystallization and preliminary X-ray characterization of the third ScaB cohesin in complex with an ScaA X-dockerin from Acetivibrio cellulolyticus.

Authors:  Kate Cameron; Victor D Alves; Pedro Bule; Luís M A Ferreira; Carlos M G A Fontes; Shabir Najmudin
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-04-25       Impact factor: 1.056

10.  Atypical cohesin-dockerin complex responsible for cell surface attachment of cellulosomal components: binding fidelity, promiscuity, and structural buttresses.

Authors:  Orly Salama-Alber; Maroor K Jobby; Seth Chitayat; Steven P Smith; Bryan A White; Linda J W Shimon; Raphael Lamed; Felix Frolow; Edward A Bayer
Journal:  J Biol Chem       Date:  2013-04-11       Impact factor: 5.157

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