Literature DB >> 25934389

Combined Crystal Structure of a Type I Cohesin: MUTATION AND AFFINITY BINDING STUDIES REVEAL STRUCTURAL DETERMINANTS OF COHESIN-DOCKERIN SPECIFICITIES.

Kate Cameron1, Jonathan Y Weinstein2, Olga Zhivin2, Pedro Bule1, Sarel J Fleishman2, Victor D Alves1, Harry J Gilbert3, Luís M A Ferreira1, Carlos M G A Fontes1, Edward A Bayer4, Shabir Najmudin1.   

Abstract

Cohesin-dockerin interactions orchestrate the assembly of one of nature's most elaborate multienzyme complexes, the cellulosome. Cellulosomes are produced exclusively by anaerobic microbes and mediate highly efficient hydrolysis of plant structural polysaccharides, such as cellulose and hemicellulose. In the canonical model of cellulosome assembly, type I dockerin modules of the enzymes bind to reiterated type I cohesin modules of a primary scaffoldin. Each type I dockerin contains two highly conserved cohesin-binding sites, which confer quaternary flexibility to the multienzyme complex. The scaffoldin also bears a type II dockerin that anchors the entire complex to the cell surface by binding type II cohesins of anchoring scaffoldins. In Bacteroides cellulosolvens, however, the organization of the cohesin-dockerin types is reversed, whereby type II cohesin-dockerin pairs integrate the enzymes into the primary scaffoldin, and type I modules mediate cellulosome attachment to an anchoring scaffoldin. Here, we report the crystal structure of a type I cohesin from B. cellulosolvens anchoring scaffoldin ScaB to 1.84-Å resolution. The structure resembles other type I cohesins, and the putative dockerin-binding site, centered at β-strands 3, 5, and 6, is likely to be conserved in other B. cellulosolvens type I cohesins. Combined computational modeling, mutagenesis, and affinity-based binding studies revealed similar hydrogen-bonding networks between putative Ser/Asp recognition residues in the dockerin at positions 11/12 and 45/46, suggesting that a dual-binding mode is not exclusive to the integration of enzymes into primary cellulosomes but can also characterize polycellulosome assembly and cell-surface attachment. This general approach may provide valuable structural information of the cohesin-dockerin interface, in lieu of a definitive crystal structure.
© 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  cellulase; cellulose; cellulosome; computational biology; computer modeling; protein-protein interaction

Mesh:

Substances:

Year:  2015        PMID: 25934389      PMCID: PMC4481221          DOI: 10.1074/jbc.M115.653303

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  35 in total

1.  Insights into the structural determinants of cohesin-dockerin specificity revealed by the crystal structure of the type II cohesin from Clostridium thermocellum SdbA.

Authors:  Ana L Carvalho; Virginia M R Pires; Tracey M Gloster; Johan P Turkenburg; José A M Prates; Luís M A Ferreira; Maria J Romão; Gideon J Davies; Carlos M G A Fontes; Harry J Gilbert
Journal:  J Mol Biol       Date:  2005-06-24       Impact factor: 5.469

2.  Mechanism of bacterial cell-surface attachment revealed by the structure of cellulosomal type II cohesin-dockerin complex.

Authors:  Jarrett J Adams; Gour Pal; Zongchao Jia; Steven P Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-29       Impact factor: 11.205

3.  Cohesin-dockerin microarray: Diverse specificities between two complementary families of interacting protein modules.

Authors:  Rachel Haimovitz; Yoav Barak; Ely Morag; Milana Voronov-Goldman; Yuval Shoham; Raphael Lamed; Edward A Bayer
Journal:  Proteomics       Date:  2008-03       Impact factor: 3.984

4.  Putting an N-terminal end to the Clostridium thermocellum xylanase Xyn10B story: crystal structure of the CBM22-1-GH10 modules complexed with xylohexaose.

Authors:  Shabir Najmudin; Benedita A Pinheiro; José A M Prates; Harry J Gilbert; Maria J Romão; Carlos M G A Fontes
Journal:  J Struct Biol       Date:  2010-08-01       Impact factor: 2.867

5.  Crystal structure of a type-II cohesin module from the Bacteroides cellulosolvens cellulosome reveals novel and distinctive secondary structural elements.

Authors:  Ilit Noach; Felix Frolow; Hilla Jakoby; Sonia Rosenheck; Lindaj W Shimon; Raphael Lamed; Edward A Bayer
Journal:  J Mol Biol       Date:  2005-04-22       Impact factor: 5.469

6.  iMOSFLM: a new graphical interface for diffraction-image processing with MOSFLM.

Authors:  T Geoff G Battye; Luke Kontogiannis; Owen Johnson; Harold R Powell; Andrew G W Leslie
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

7.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

8.  Description of Anaerobacterium chartisolvens gen. nov., sp. nov., an obligately anaerobic bacterium from Clostridium rRNA cluster III isolated from soil of a Japanese rice field, and reclassification of Bacteroides cellulosolvens Murray et al. 1984 as Pseudobacteroides cellulosolvens gen. nov., comb. nov.

Authors:  Haruka Horino; Takashi Fujita; Akio Tonouchi
Journal:  Int J Syst Evol Microbiol       Date:  2014-01-14       Impact factor: 2.747

9.  The Clostridium cellulolyticum dockerin displays a dual binding mode for its cohesin partner.

Authors:  Benedita A Pinheiro; Mark R Proctor; Carlos Martinez-Fleites; José A M Prates; Victoria A Money; Gideon J Davies; Edward A Bayer; Carlos M G A Fontesm; Henri-Pierre Fierobe; Harry J Gilbert
Journal:  J Biol Chem       Date:  2008-04-28       Impact factor: 5.157

10.  BALBES: a molecular-replacement pipeline.

Authors:  Fei Long; Alexei A Vagin; Paul Young; Garib N Murshudov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-12-05
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  6 in total

1.  Single Binding Mode Integration of Hemicellulose-degrading Enzymes via Adaptor Scaffoldins in Ruminococcus flavefaciens Cellulosome.

Authors:  Pedro Bule; Victor D Alves; André Leitão; Luís M A Ferreira; Edward A Bayer; Steven P Smith; Harry J Gilbert; Shabir Najmudin; Carlos M G A Fontes
Journal:  J Biol Chem       Date:  2016-11-14       Impact factor: 5.157

2.  Discovery and mechanism of a pH-dependent dual-binding-site switch in the interaction of a pair of protein modules.

Authors:  Xingzhe Yao; Chao Chen; Yefei Wang; Sheng Dong; Ya-Jun Liu; Yifei Li; Zhenling Cui; Weibin Gong; Sarah Perrett; Lishan Yao; Raphael Lamed; Edward A Bayer; Qiu Cui; Yingang Feng
Journal:  Sci Adv       Date:  2020-10-23       Impact factor: 14.136

3.  Near-Complete Genome Sequence of the Cellulolytic Bacterium Bacteroides (Pseudobacteroides) cellulosolvens ATCC 35603.

Authors:  Bareket Dassa; Sagar Utturkar; Richard A Hurt; Dawn M Klingeman; Martin Keller; Jian Xu; Y Harish Kumar Reddy; Ilya Borovok; Inna Rozman Grinberg; Raphael Lamed; Olga Zhivin; Edward A Bayer; Steven D Brown
Journal:  Genome Announc       Date:  2015-09-24

4.  Unique organization and unprecedented diversity of the Bacteroides (Pseudobacteroides) cellulosolvens cellulosome system.

Authors:  Olga Zhivin; Bareket Dassa; Sarah Moraïs; Sagar M Utturkar; Steven D Brown; Bernard Henrissat; Raphael Lamed; Edward A Bayer
Journal:  Biotechnol Biofuels       Date:  2017-09-07       Impact factor: 6.040

5.  Assembly of Ruminococcus flavefaciens cellulosome revealed by structures of two cohesin-dockerin complexes.

Authors:  Pedro Bule; Victor D Alves; Vered Israeli-Ruimy; Ana L Carvalho; Luís M A Ferreira; Steven P Smith; Harry J Gilbert; Shabir Najmudin; Edward A Bayer; Carlos M G A Fontes
Journal:  Sci Rep       Date:  2017-04-07       Impact factor: 4.379

6.  Higher order scaffoldin assembly in Ruminococcus flavefaciens cellulosome is coordinated by a discrete cohesin-dockerin interaction.

Authors:  Pedro Bule; Virgínia M R Pires; Victor D Alves; Ana Luísa Carvalho; José A M Prates; Luís M A Ferreira; Steven P Smith; Harry J Gilbert; Ilit Noach; Edward A Bayer; Shabir Najmudin; Carlos M G A Fontes
Journal:  Sci Rep       Date:  2018-05-03       Impact factor: 4.379

  6 in total

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