Literature DB >> 15781704

Intron size and exon evolution in Drosophila.

Gabriel Marais1, Pierre Nouvellet, Peter D Keightley, Brian Charlesworth.   

Abstract

We have found a negative correlation between evolutionary rate at the protein level (as measured by d(N)) and intron size in Drosophila. Although such a relation is expected if introns reduce Hill-Robertson interference within genes, it seems more likely to be explained by the higher abundance of cis-regulatory elements in introns (especially first introns) in genes under strong selective constraints.

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Year:  2005        PMID: 15781704      PMCID: PMC1449718          DOI: 10.1534/genetics.104.037333

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  37 in total

1.  Distribution and characterization of regulatory elements in the human genome.

Authors:  Jacek Majewski; Jurg Ott
Journal:  Genome Res       Date:  2002-12       Impact factor: 9.043

2.  Genome evolution: recombination speeds up adaptive evolution.

Authors:  Gabriel Marais; Brian Charlesworth
Journal:  Curr Biol       Date:  2003-01-21       Impact factor: 10.834

3.  Intron size correlates positively with recombination rate in Caenorhabditis elegans.

Authors:  Anuphap Prachumwat; Laura DeVincentis; Michael F Palopoli
Journal:  Genetics       Date:  2004-03       Impact factor: 4.562

4.  Similar rates but different modes of sequence evolution in introns and at exonic silent sites in rodents: evidence for selectively driven codon usage.

Authors:  Jean-Vincent Chamary; Laurence D Hurst
Journal:  Mol Biol Evol       Date:  2004-03-10       Impact factor: 16.240

5.  Functional constraints and frequency of deleterious mutations in noncoding DNA of rodents.

Authors:  Peter D Keightley; Daniel J Gaffney
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-03       Impact factor: 11.205

6.  Hill-Robertson interference is a minor determinant of variations in codon bias across Drosophila melanogaster and Caenorhabditis elegans genomes.

Authors:  Gabriel Marais; Gwenaël Piganeau
Journal:  Mol Biol Evol       Date:  2002-09       Impact factor: 16.240

7.  Translational selection and yeast proteome evolution.

Authors:  Hiroshi Akashi
Journal:  Genetics       Date:  2003-08       Impact factor: 4.562

8.  Patterns of evolutionary constraints in intronic and intergenic DNA of Drosophila.

Authors:  Daniel L Halligan; Adam Eyre-Walker; Peter Andolfatto; Peter D Keightley
Journal:  Genome Res       Date:  2004-02       Impact factor: 9.043

9.  DNA loss and evolution of genome size in Drosophila.

Authors:  Dmitri A Petrov
Journal:  Genetica       Date:  2002-05       Impact factor: 1.082

10.  An evolutionary analysis of orphan genes in Drosophila.

Authors:  Tomislav Domazet-Loso; Diethard Tautz
Journal:  Genome Res       Date:  2003-10       Impact factor: 9.043

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  61 in total

1.  Genetic and evolutionary correlates of fine-scale recombination rate variation in Drosophila persimilis.

Authors:  Laurie S Stevison; Mohamed A F Noor
Journal:  J Mol Evol       Date:  2010-10-02       Impact factor: 2.395

2.  Ubiquitous selective constraints in the Drosophila genome revealed by a genome-wide interspecies comparison.

Authors:  Daniel L Halligan; Peter D Keightley
Journal:  Genome Res       Date:  2006-06-02       Impact factor: 9.043

3.  The architecture of pre-mRNAs affects mechanisms of splice-site pairing.

Authors:  Kristi L Fox-Walsh; Yimeng Dou; Bianca J Lam; She-Pin Hung; Pierre F Baldi; Klemens J Hertel
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-31       Impact factor: 11.205

4.  Comparative genomic analysis links karyotypic evolution with genomic evolution in the Indian muntjac (Muntiacus muntjak vaginalis).

Authors:  Qi Zhou; Ling Huang; Jianguo Zhang; Xiangyi Zhao; Qingpeng Zhang; Fei Song; Jianxiang Chi; Fengtang Yang; Wen Wang
Journal:  Chromosoma       Date:  2006-06-22       Impact factor: 4.316

5.  Selection for the compactness of highly expressed genes in Gallus gallus.

Authors:  You S Rao; Zhang F Wang; Xue W Chai; Guo Z Wu; Ming Zhou; Qing H Nie; Xi Q Zhang
Journal:  Biol Direct       Date:  2010-05-14       Impact factor: 4.540

6.  Tubulin evolution in insects: gene duplication and subfunctionalization provide specialized isoforms in a functionally constrained gene family.

Authors:  Mark G Nielsen; Sudhindra R Gadagkar; Lisa Gutzwiller
Journal:  BMC Evol Biol       Date:  2010-04-27       Impact factor: 3.260

7.  Properties of non-coding DNA and identification of putative cis-regulatory elements in Theileria parva.

Authors:  Xiang Guo; Joana C Silva
Journal:  BMC Genomics       Date:  2008-12-03       Impact factor: 3.969

8.  In plants, expression breadth and expression level distinctly and non-linearly correlate with gene structure.

Authors:  Hangxing Yang
Journal:  Biol Direct       Date:  2009-11-21       Impact factor: 4.540

9.  Large introns in relation to alternative splicing and gene evolution: a case study of Drosophila bruno-3.

Authors:  Nikolai P Kandul; Mohamed A F Noor
Journal:  BMC Genet       Date:  2009-10-19       Impact factor: 2.797

10.  A global comparison between nuclear and cytosolic transcriptomes reveals differential compartmentalization of alternative transcript isoforms.

Authors:  Liang Chen
Journal:  Nucleic Acids Res       Date:  2009-12-06       Impact factor: 16.971

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