Literature DB >> 15766549

Tangible interfaces for structural molecular biology.

Alexandre Gillet1, Michel Sanner, Daniel Stoffler, Arthur Olson.   

Abstract

The evolving technology of computer autofabrication makes it possible to produce physical models for complex biological molecules and assemblies. Augmented reality has recently developed as a computer interface technology that enables the mixing of real-world objects and computer-generated graphics. We report an application that demonstrates the use of autofabricated tangible models and augmented reality for research and communication in molecular biology. We have extended our molecular modeling environment, PMV, to support the fabrication of a wide variety of physical molecular models, and have adapted an augmented reality system to allow virtual 3D representations to be overlaid onto the tangible molecular models. Users can easily change the overlaid information, switching between different representations of the molecule, displays of molecular properties, or dynamic information. The physical models provide a powerful, intuitive interface for manipulating the computer models, streamlining the interface between human intent, the physical model, and the computational activity.

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Year:  2005        PMID: 15766549     DOI: 10.1016/j.str.2005.01.009

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  19 in total

1.  Interpretation of electron density with stereographic roadmap projections.

Authors:  Chuan Xiao; Michael G Rossmann
Journal:  J Struct Biol       Date:  2006-10-24       Impact factor: 2.867

Review 2.  Visualization software for molecular assemblies.

Authors:  Thomas D Goddard; Thomas E Ferrin
Journal:  Curr Opin Struct Biol       Date:  2007-08-28       Impact factor: 6.809

3.  Coarse-grained, foldable, physical model of the polypeptide chain.

Authors:  Promita Chakraborty; Ronald N Zuckermann
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-29       Impact factor: 11.205

4.  Visualizing biological data-now and in the future.

Authors:  Seán I O'Donoghue; Anne-Claude Gavin; Nils Gehlenborg; David S Goodsell; Jean-Karim Hériché; Cydney B Nielsen; Chris North; Arthur J Olson; James B Procter; David W Shattuck; Thomas Walter; Bang Wong
Journal:  Nat Methods       Date:  2010-03       Impact factor: 28.547

5.  Tangible assets.

Authors:  Michelle Francl
Journal:  Nat Chem       Date:  2013-03       Impact factor: 24.427

6.  A Self-Assisting Protein Folding Model for Teaching Structural Molecular Biology.

Authors:  Jodi Davenport; Michael Pique; Elizabeth Getzoff; Jon Huntoon; Adam Gardner; Arthur Olson
Journal:  Structure       Date:  2017-04-04       Impact factor: 5.006

7.  ePMV embeds molecular modeling into professional animation software environments.

Authors:  Graham T Johnson; Ludovic Autin; David S Goodsell; Michel F Sanner; Arthur J Olson
Journal:  Structure       Date:  2011-03-09       Impact factor: 5.006

8.  uPy: a ubiquitous CG Python API with biological-modeling applications.

Authors:  Ludovic Autin; Graham Johnson; Johan Hake; Arthur Olson; Michel Sanner
Journal:  IEEE Comput Graph Appl       Date:  2012 Sep-Oct       Impact factor: 2.088

Review 9.  Perspectives on Structural Molecular Biology Visualization: From Past to Present.

Authors:  Arthur J Olson
Journal:  J Mol Biol       Date:  2018-07-23       Impact factor: 5.469

Review 10.  The OPEP protein model: from single molecules, amyloid formation, crowding and hydrodynamics to DNA/RNA systems.

Authors:  Fabio Sterpone; Simone Melchionna; Pierre Tuffery; Samuela Pasquali; Normand Mousseau; Tristan Cragnolini; Yassmine Chebaro; Jean-Francois St-Pierre; Maria Kalimeri; Alessandro Barducci; Yoann Laurin; Alex Tek; Marc Baaden; Phuong Hoang Nguyen; Philippe Derreumaux
Journal:  Chem Soc Rev       Date:  2014-04-23       Impact factor: 54.564

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