Literature DB >> 15756587

Apparent charge of binding site in ion-translocating enzymes: kinetic impact.

Dietrich Gradmann1, Carl M Boyd.   

Abstract

Recently, we presented a general scope for the nonlinear electrical properties of enzymes E which catalyze translocation of a substrate S with charge number z(S) through lipid membranes (Boyd et al. J. Membr. Biol. 195:1-12, 2003). In this study, the voltage sensitivity of the enzymatic reaction cycle has been assigned to one predominant reversible reaction step, i.e. the reorientation of either E or ES in the electric field, leaving the reorientation of the alternate state (ES or E) electroneutral, respectively. With this simplification, the steady-state current-voltage relationships (IV) assumed saturation kinetics like in Michaelis-Menten systems. Here, we introduce an apparent charge number z(E) of the unoccupied binding site of the enzyme, which accounts for the impact of all charged residues in the vicinity of the physical binding site. With this more realistic concept, the occupied binding site assumes an apparent charge of z(ES) = z(E) + z(S), and IV does not saturate any more in general, but exponentially approaches infinite or zero current for large voltage displacements from equilibrium. These nonlinear characteristics are presented here explicitly. They are qualitatively explained in a mechanistic way, and are illustrated by simple examples. We also demonstrate that the correct determination of the model parameters from experimental data is still possible after incorporating z(E) and its corollaries into the previous model of enzyme-mediated ion translocation.

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Year:  2005        PMID: 15756587     DOI: 10.1007/s00249-004-0457-5

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  10 in total

1.  Three types of membrane excitations in the marine diatom Coscinodiscus wailesii.

Authors:  D Gradmann; C M Boyd
Journal:  J Membr Biol       Date:  2000-05-15       Impact factor: 1.843

2.  Energetics of ion conduction through the K+ channel.

Authors:  S Bernèche; B Roux
Journal:  Nature       Date:  2001-11-01       Impact factor: 49.962

3.  Energetic optimization of ion conduction rate by the K+ selectivity filter.

Authors:  J H Morais-Cabral; Y Zhou; R MacKinnon
Journal:  Nature       Date:  2001-11-01       Impact factor: 49.962

4.  Transinhibition and voltage-gating in a fungal nitrate transporter.

Authors:  J Boyd; D Gradmann; C M Boyd
Journal:  J Membr Biol       Date:  2003-09-15       Impact factor: 1.843

5.  The principle of gating charge movement in a voltage-dependent K+ channel.

Authors:  Youxing Jiang; Vanessa Ruta; Jiayun Chen; Alice Lee; Roderick MacKinnon
Journal:  Nature       Date:  2003-05-01       Impact factor: 49.962

6.  Current-voltage-time records of ion translocating enzymes.

Authors:  Dietrich Gradmann; Carl M Boyd
Journal:  Eur Biophys J       Date:  2004-02-05       Impact factor: 1.733

Review 7.  Channels as enzymes.

Authors:  R S Eisenberg
Journal:  J Membr Biol       Date:  1990-04       Impact factor: 1.843

8.  Electrophysiology of the marine diatom Coscinodiscus wailesii IV: types of non-linear current-voltage-time relationships recorded with single saw-tooth voltage-clamp experiments.

Authors:  D Gradmann; C M Boyd
Journal:  Eur Biophys J       Date:  1999       Impact factor: 1.733

Review 9.  Kinetic properties of ion carriers and channels.

Authors:  P Läuger
Journal:  J Membr Biol       Date:  1980-12-30       Impact factor: 1.843

10.  Interpretation of current-voltage relationships for "active" ion transport systems: I. Steady-state reaction-kinetic analysis of class-I mechanisms.

Authors:  U P Hansen; D Gradmann; D Sanders; C L Slayman
Journal:  J Membr Biol       Date:  1981       Impact factor: 1.843

  10 in total
  7 in total

1.  A simple recipe for setting up the flux equations of cyclic and linear reaction schemes of ion transport with a high number of states: The arrow scheme.

Authors:  Ulf-Peter Hansen; Oliver Rauh; Indra Schroeder
Journal:  Channels (Austin)       Date:  2015-12-08       Impact factor: 2.581

2.  Fast, triangular voltage clamp for recording and kinetic analysis of an ion transporter expressed in Xenopus oocytes.

Authors:  Dietrich Gradmann; Carl M Boyd
Journal:  Biophys J       Date:  2005-04-22       Impact factor: 4.033

3.  Electrokinetics of miniature K+ channel: open-state V sensitivity and inhibition by K+ driving force.

Authors:  Sabrina Gazzarrini; Alessandra Abenavoli; Dietrich Gradmann; Gerhard Thiel; Anna Moroni
Journal:  J Membr Biol       Date:  2007-06-13       Impact factor: 1.843

4.  Ion selectivity and competition in channelrhodopsins.

Authors:  Franziska Schneider; Dietrich Gradmann; Peter Hegemann
Journal:  Biophys J       Date:  2013-07-02       Impact factor: 4.033

5.  Rectification of the channelrhodopsin early conductance.

Authors:  Dietrich Gradmann; André Berndt; Franziska Schneider; Peter Hegemann
Journal:  Biophys J       Date:  2011-09-07       Impact factor: 4.033

Review 6.  Mathematical Models of Electrical Activity in Plants.

Authors:  Ekaterina Sukhova; Elena Akinchits; Vladimir Sukhov
Journal:  J Membr Biol       Date:  2017-07-15       Impact factor: 1.843

7.  Dynamics of voltage profile in enzymatic ion transporters, demonstrated in electrokinetics of proton pumping rhodopsin.

Authors:  Rolf Hagedorn; Dietrich Gradmann; Peter Hegemann
Journal:  Biophys J       Date:  2008-07-11       Impact factor: 4.033

  7 in total

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