Literature DB >> 15752983

From genes to machines: DNA nanomechanical devices.

Nadrian C Seeman1.   

Abstract

The structural properties that enable DNA to serve so effectively as genetic material can also be used for other purposes. The complementarity that leads to the pairing of the strands of the DNA double helix can be exploited to assemble more complex motifs, based on branched structures. These structures have been used as the basis of larger 2D and 3D constructions. In addition, they have been used to make nanomechanical devices. These devices range from DNA-based shape-shifting structures to gears and walkers, a DNA-stress gauge and even a translation device. The devices are activated by mechanisms as diverse as small molecules, proteins and, most intriguingly, other molecules of DNA.

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Year:  2005        PMID: 15752983      PMCID: PMC3471994          DOI: 10.1016/j.tibs.2005.01.007

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  40 in total

1.  Using DNA to construct and power a nanoactuator.

Authors:  F C Simmel; B Yurke
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2001-03-29

2.  A synthetic oscillatory network of transcriptional regulators.

Authors:  M B Elowitz; S Leibler
Journal:  Nature       Date:  2000-01-20       Impact factor: 49.962

3.  A DNA-fuelled molecular machine made of DNA.

Authors:  B Yurke; A J Turberfield; A P Mills; F C Simmel; J L Neumann
Journal:  Nature       Date:  2000-08-10       Impact factor: 49.962

4.  A robust DNA mechanical device controlled by hybridization topology.

Authors:  Hao Yan; Xiaoping Zhang; Zhiyong Shen; Nadrian C Seeman
Journal:  Nature       Date:  2002-01-03       Impact factor: 49.962

5.  Nucleic acid supercoiling as a means for ionic switching of DNA--nanoparticle networks.

Authors:  C M Niemeyer; M Adler; S Lenhert; S Gao; H Fuchs; L Chi
Journal:  Chembiochem       Date:  2001-04-02       Impact factor: 3.164

6.  DNA fuel for free-running nanomachines.

Authors:  A J Turberfield; J C Mitchell; B Yurke; A P Mills; M I Blakey; F C Simmel
Journal:  Phys Rev Lett       Date:  2003-03-18       Impact factor: 9.161

7.  DNA duplex-quadruplex exchange as the basis for a nanomolecular machine.

Authors:  Patrizia Alberti; Jean-Louis Mergny
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-06       Impact factor: 11.205

Review 8.  DNA in a material world.

Authors:  Nadrian C Seeman
Journal:  Nature       Date:  2003-01-23       Impact factor: 49.962

9.  Helix formation by guanylic acid.

Authors:  M GELLERT; M N LIPSETT; D R DAVIES
Journal:  Proc Natl Acad Sci U S A       Date:  1962-12-15       Impact factor: 11.205

10.  Translation of DNA signals into polymer assembly instructions.

Authors:  Shiping Liao; Nadrian C Seeman
Journal:  Science       Date:  2004-12-17       Impact factor: 47.728

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  64 in total

1.  All-DNA finite-state automata with finite memory.

Authors:  Zhen-Gang Wang; Johann Elbaz; F Remacle; R D Levine; Itamar Willner
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-06       Impact factor: 11.205

Review 2.  Artificial Molecular Machines.

Authors:  Sundus Erbas-Cakmak; David A Leigh; Charlie T McTernan; Alina L Nussbaumer
Journal:  Chem Rev       Date:  2015-09-08       Impact factor: 60.622

3.  RNA used to control a DNA rotary nanomachine.

Authors:  Hong Zhong; Nadrian C Seeman
Journal:  Nano Lett       Date:  2006-12       Impact factor: 11.189

4.  Kinetics of protein-release by an aptamer-based DNA nanodevice.

Authors:  A Reuter; W U Dittmer; F C Simmel
Journal:  Eur Phys J E Soft Matter       Date:  2007-02-16       Impact factor: 1.890

5.  Directing macromolecular conformation through halogen bonds.

Authors:  Andrea Regier Voth; Franklin A Hays; P Shing Ho
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-22       Impact factor: 11.205

Review 6.  An overview of structural DNA nanotechnology.

Authors:  Nadrian C Seeman
Journal:  Mol Biotechnol       Date:  2007-07-12       Impact factor: 2.695

7.  Molecular spiders with memory.

Authors:  Tibor Antal; P L Krapivsky
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-08-24

8.  Metal ion dependence, thermodynamics, and kinetics for intramolecular docking of a GAAA tetraloop and receptor connected by a flexible linker.

Authors:  Christopher D Downey; Julie L Fiore; Colby D Stoddard; Jose H Hodak; David J Nesbitt; Arthur Pardi
Journal:  Biochemistry       Date:  2006-03-21       Impact factor: 3.162

9.  Design of molecular logic devices based on a programmable DNA-regulated semisynthetic enzyme.

Authors:  Nathan C Gianneschi; M Reza Ghadiri
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

10.  Evolving a polymerase for hydrophobic base analogues.

Authors:  David Loakes; José Gallego; Vitor B Pinheiro; Eric T Kool; Philipp Holliger
Journal:  J Am Chem Soc       Date:  2009-10-21       Impact factor: 15.419

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