Literature DB >> 15735345

A novel cryoprotection scheme for enhancing the diffraction of crystals of recombinant cytochrome ba3 oxidase from Thermus thermophilus.

Laura M Hunsicker-Wang1, Ronald L Pacoma, Ying Chen, James A Fee, C David Stout.   

Abstract

Cytochrome ba(3) oxidase is an integral membrane protein identified in the thermophilic bacterium Thermus thermophilus. The enzyme has now been expressed recombinantly and purified with a histidine tag. As such, it crystallizes under similar conditions and in the same space group (P4(3)2(1)2) as the native protein. A novel cryoprotection scheme is described here to obtain high-resolution diffraction from these crystals, which involves soaking in a mixture of glycerol and ethylene glycol under a layer of oil. The unit-cell parameters for these crystals are larger than the native protein, apparently deriving from increased ordering of the N-terminus and an internal loop (residues 495-500) in subunit I. Hence, compared with native cytochrome ba(3) oxidase, the recombinant His-tagged protein is accommodated in an expanded but equally well ordered lattice via an alternate set of specific intermolecular contacts. The structure was refined against data to 2.3 angstroms resolution to an R factor of 21.7% and an R(free) of 23.7%.

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Year:  2005        PMID: 15735345     DOI: 10.1107/S0907444904033906

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  38 in total

1.  CO impedes superfast O2 binding in ba3 cytochrome oxidase from Thermus thermophilus.

Authors:  Istvan Szundi; Chie Funatogawa; James A Fee; Tewfik Soulimane; Olöf Einarsdóttir
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-19       Impact factor: 11.205

2.  An unexpected outcome of surface engineering an integral membrane protein: improved crystallization of cytochrome ba(3) from Thermus thermophilus.

Authors:  Bin Liu; V Mitch Luna; Ying Chen; C David Stout; James A Fee
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-11-21

3.  Structural basis of transmembrane domain interactions in integrin signaling.

Authors:  Tobias S Ulmer
Journal:  Cell Adh Migr       Date:  2010-04-10       Impact factor: 3.405

4.  Structure of the integrin alphaIIb transmembrane segment.

Authors:  Tong-Lay Lau; Varun Dua; Tobias S Ulmer
Journal:  J Biol Chem       Date:  2008-04-16       Impact factor: 5.157

5.  The cytochrome ba3 oxygen reductase from Thermus thermophilus uses a single input channel for proton delivery to the active site and for proton pumping.

Authors:  Hsin-Yang Chang; James Hemp; Ying Chen; James A Fee; Robert B Gennis
Journal:  Proc Natl Acad Sci U S A       Date:  2009-09-10       Impact factor: 11.205

Review 6.  Conserved lipid-binding sites in membrane proteins: a focus on cytochrome c oxidase.

Authors:  Ling Qin; Martyn A Sharpe; R Michael Garavito; Shelagh Ferguson-Miller
Journal:  Curr Opin Struct Biol       Date:  2007-08-23       Impact factor: 6.809

7.  Fourier transform infrared characterization of a CuB-nitrosyl complex in cytochrome ba3 from Thermus thermophilus: relevance to NO reductase activity in heme-copper terminal oxidases.

Authors:  Takahiro Hayashi; I-Jin Lin; Ying Chen; James A Fee; Pierre Moënne-Loccoz
Journal:  J Am Chem Soc       Date:  2007-11-13       Impact factor: 15.419

8.  Cytochrome aa3 Oxygen Reductase Utilizes the Tunnel Observed in the Crystal Structures To Deliver O2 for Catalysis.

Authors:  Paween Mahinthichaichan; Robert B Gennis; Emad Tajkhorshid
Journal:  Biochemistry       Date:  2018-03-29       Impact factor: 3.162

9.  Combined microspectrophotometric and crystallographic examination of chemically reduced and X-ray radiation-reduced forms of cytochrome ba3 oxidase from Thermus thermophilus: structure of the reduced form of the enzyme.

Authors:  Bin Liu; Ying Chen; Tzanko Doukov; S Michael Soltis; C David Stout; James A Fee
Journal:  Biochemistry       Date:  2009-02-10       Impact factor: 3.162

10.  Accommodation of two diatomic molecules in cytochrome bo: insights into NO reductase activity in terminal oxidases.

Authors:  Takahiro Hayashi; Myat T Lin; Krithika Ganesan; Ying Chen; James A Fee; Robert B Gennis; Pierre Moënne-Loccoz
Journal:  Biochemistry       Date:  2009-02-10       Impact factor: 3.162

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